Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq1963008 89.7 8e-16
seq347736 86.0 1e-14
seq347096 80.6 4e-13
seq186115 80.6 4e-13
seq1788246 78.8 1e-12
seq272222 73.4 6e-11
seq246181 73.4 6e-11
seq175530 73.4 6e-11
>seq1963008
Length=127
Score = 89.7 bits (98), Expect = 8e-16
Identities = 86/108 (80%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 7 GAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCG 66
|||||||||| | |||||| | ||||| | || | || |||| || || || |||
Sbjct 1 GAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCG 58
Query 67 AAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
||||| ||||||| |||||||| ||||||||||||||||||||||||
Sbjct 59 AAGCTCCCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 106
>seq347736
Length=14156
Score = 86.0 bits (94), Expect = 1e-14
Identities = 89/114 (78%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| ||||||||| |||| |||||| | ||||| | || | || |||| | ||||
Sbjct 5430 GTAGGAGAGGAACTGCGGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGGGTCAGT 5487
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| ||||||||||||||| |||||||| ||||| ||||| ||||||||||||
Sbjct 5488 GGGTCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCCAAGTCAGAATCC 5541
>seq347096
Length=1937
Score = 80.6 bits (88), Expect = 4e-13
Identities = 52/56 (93%), Gaps = 1/56 (2%)
Strand=Plus/Minus
Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119
|||||||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct 1925 GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC-TGCC 1871
>seq186115
Length=32189
Score = 80.6 bits (88), Expect = 4e-13
Identities = 52/56 (93%), Gaps = 1/56 (2%)
Strand=Plus/Plus
Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119
|||||||||||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct 30335 GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC-TGCC 30389
>seq1788246
Length=127
Score = 78.8 bits (86), Expect = 1e-12
Identities = 67/83 (81%), Gaps = 0/83 (0%)
Strand=Plus/Plus
Query 32 TGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGC 91
|||| | || | || |||| || || || |||||||||||||||| |||||||| |
Sbjct 1 TGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGAC 60
Query 92 TGAACGCCTCTAAGTCAGAATCC 114
||| |||||||||||||||||||
Sbjct 61 TGACCGCCTCTAAGTCAGAATCC 83
>seq272222
Length=4432
Score = 73.4 bits (80), Expect = 6e-11
Identities = 60/72 (83%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107
|||| || || || ||||||||||| |||| |||||||| |||||| ||||||||||
Sbjct 1631 CTGAGGAGCCAATGGAGCGAAGCTACCCTCTGTGGGATTATGACTGAACACCTCTAAGTC 1572
Query 108 AGAATCCATGCC 119
||||||| ||||
Sbjct 1571 AGAATCC-TGCC 1561
>seq246181
Length=1794
Score = 73.4 bits (80), Expect = 6e-11
Identities = 60/72 (83%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107
|||| || || || |||||||||||||||| |||||||| |||||| ||||||| ||
Sbjct 1400 CTGAGAAGCCAATGGAGCGAAGCTACCATCTGTGGGATTATGACTGAACACCTCTAAATC 1341
Query 108 AGAATCCATGCC 119
||||||| ||||
Sbjct 1340 AGAATCC-TGCC 1330
>seq175530
Length=10400
Score = 73.4 bits (80), Expect = 6e-11
Identities = 60/72 (83%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107
|||| || ||||| |||||| ||||| ||| |||||||| |||||| ||||||||||
Sbjct 8359 CTGAGGAGCCAGTGGAGCGAAGGTACCACCTGTGGGATTATGACTGAACACCTCTAAGTC 8418
Query 108 AGAATCCATGCC 119
||||||| ||||
Sbjct 8419 AGAATCC-TGCC 8429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794689576704
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |