Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq1963008 89.7 8e-16 seq347736 86.0 1e-14 seq347096 80.6 4e-13 seq186115 80.6 4e-13 seq1788246 78.8 1e-12 seq272222 73.4 6e-11 seq246181 73.4 6e-11 seq175530 73.4 6e-11 >seq1963008 Length=127 Score = 89.7 bits (98), Expect = 8e-16 Identities = 86/108 (80%), Gaps = 2/108 (2%) Strand=Plus/Plus Query 7 GAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCG 66 |||||||||| | |||||| | ||||| | || | || |||| || || || ||| Sbjct 1 GAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCG 58 Query 67 AAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 ||||| ||||||| |||||||| |||||||||||||||||||||||| Sbjct 59 AAGCTCCCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 106 >seq347736 Length=14156 Score = 86.0 bits (94), Expect = 1e-14 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| ||||||||| |||| |||||| | ||||| | || | || |||| | |||| Sbjct 5430 GTAGGAGAGGAACTGCGGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGGGTCAGT 5487 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||||| |||||||| ||||| ||||| |||||||||||| Sbjct 5488 GGGTCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCCAAGTCAGAATCC 5541 >seq347096 Length=1937 Score = 80.6 bits (88), Expect = 4e-13 Identities = 52/56 (93%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 |||||||||||||||| |||||||| |||||||||||||||||||||||| |||| Sbjct 1925 GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC-TGCC 1871 >seq186115 Length=32189 Score = 80.6 bits (88), Expect = 4e-13 Identities = 52/56 (93%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCC 119 |||||||||||||||| |||||||| |||||||||||||||||||||||| |||| Sbjct 30335 GCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC-TGCC 30389 >seq1788246 Length=127 Score = 78.8 bits (86), Expect = 1e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 32 TGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGC 91 |||| | || | || |||| || || || |||||||||||||||| |||||||| | Sbjct 1 TGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGAC 60 Query 92 TGAACGCCTCTAAGTCAGAATCC 114 ||| ||||||||||||||||||| Sbjct 61 TGACCGCCTCTAAGTCAGAATCC 83 >seq272222 Length=4432 Score = 73.4 bits (80), Expect = 6e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||| || || || ||||||||||| |||| |||||||| |||||| |||||||||| Sbjct 1631 CTGAGGAGCCAATGGAGCGAAGCTACCCTCTGTGGGATTATGACTGAACACCTCTAAGTC 1572 Query 108 AGAATCCATGCC 119 ||||||| |||| Sbjct 1571 AGAATCC-TGCC 1561 >seq246181 Length=1794 Score = 73.4 bits (80), Expect = 6e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||| || || || |||||||||||||||| |||||||| |||||| ||||||| || Sbjct 1400 CTGAGAAGCCAATGGAGCGAAGCTACCATCTGTGGGATTATGACTGAACACCTCTAAATC 1341 Query 108 AGAATCCATGCC 119 ||||||| |||| Sbjct 1340 AGAATCC-TGCC 1330 >seq175530 Length=10400 Score = 73.4 bits (80), Expect = 6e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||| || ||||| |||||| ||||| ||| |||||||| |||||| |||||||||| Sbjct 8359 CTGAGGAGCCAGTGGAGCGAAGGTACCACCTGTGGGATTATGACTGAACACCTCTAAGTC 8418 Query 108 AGAATCCATGCC 119 ||||||| |||| Sbjct 8419 AGAATCC-TGCC 8429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794689576704