Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_009552.2 Length=40863 Score E Sequences producing significant alignments: (Bits) Value seq2787364 87.8 5e-13 >seq2787364 Length=229 Score = 87.8 bits (96), Expect = 5e-13 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 38216 GCCCAACAATGCGACTTGGATGTCGGT-GAACTCATTTTCACCGGCGGCGACGTCCATTT 38274 ||||| ||||||||| || || || || |||| ||||| |||||| ||| Sbjct 225 GCCCAGCAATGCGACCTG-ATCCCGCACGAGATCATCGTCACCACTGGCGACACCCACGC 167 Query 38275 GTACAAAAATCATCTGGAACA-AGCGAAACTGCAGCTGACGCGCGAGCCGCGCCCGCTGC 38333 ||||| || || ||||||| | | ||| |||||| ||||| |||| ||||| Sbjct 166 GTACAGCAACCACATGGAACAGATCCGCACT-CAGCTGGCGCGCACGCCGAAAAAGCTGC 108 Query 38334 CGAAGCTTGTGCTGAAACGGAAGCCGCCGTCTATCTTTGACTATGAATACGACGACTTTG 38393 || | || ||| | || || || || |||| |||| |||||| | | ||| ||||||| Sbjct 107 CGGAACTGGTGATCAAGCGCAAACCTGCGTCGATCTACGACTATAAGTTCGAAGACTTTG 48 Query 38394 AAATCGTCGGCTACGA 38409 |||||||||||||||| Sbjct 47 AAATCGTCGGCTACGA 32 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 125848638460150