Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq20229 116 3e-21
seq194669 96.9 3e-15
seq2306809 82.4 6e-11
>seq20229
Length=11930
Score = 116 bits (128), Expect = 3e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||| ||
Sbjct 4840 GGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTG 4899
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| ||||| || | ||| ||||| | |||||| || || || ||||| ||
Sbjct 4900 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCTG 4959
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
|||||||||||||| | ||||||
Sbjct 4960 AGACTCAATGATGGCATACCAAAG 4983
>seq194669
Length=4388
Score = 96.9 bits (106), Expect = 3e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| ||||| || || || ||||||| || |||||||| ||||| || |
Sbjct 1992 TGGAGCGCTTCAGTCAGGAAGTACAGGTTCCGGAGGCTCGCTGTTTCTATGGCTTTCAAA 2051
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
|| ||| |||||||| ||||| |||||||||||| | || || || || |||||||| |
Sbjct 2052 TTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAG 2111
Query 61376 A 61376
|
Sbjct 2112 A 2112
>seq2306809
Length=138
Score = 82.4 bits (90), Expect = 6e-11
Identities = 102/137 (74%), Gaps = 2/137 (1%)
Strand=Plus/Minus
Query 61193 ATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATT 61252
|||| ||| |||||| |||| |||||||| || || || || || ||||| ||||
Sbjct 138 ATTTTATTTCCCATGTGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATT 79
Query 61253 TATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311
| |||| || ||| || || || || || | | || || ||||||||||| ||||||
Sbjct 78 TGGTGGAGCGGTTTTGC-CAAGAAGTTCAGATTACCGAAGCCCGTTGTTTCTATGGCTTC 20
Query 61312 CAGATTGCCATGGAGAA 61328
|| ||||||||||| ||
Sbjct 19 CAAATTGCCATGGAAAA 3
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 382603052341040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |