Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq20229 116 3e-21 seq194669 96.9 3e-15 seq2306809 82.4 6e-11 >seq20229 Length=11930 Score = 116 bits (128), Expect = 3e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || ||||| |||||||| || ||||| ||||| ||||| ||||| || Sbjct 4840 GGTATACTCCACTATTTCTGTGCACAGGTTGCTGCATTTGATGGTTCCCAAGTTCTGCTG 4899 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| ||||| || | ||| ||||| | |||||| || || || ||||| || Sbjct 4900 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTACCTGTCTCTGTCTG 4959 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | |||||| Sbjct 4960 AGACTCAATGATGGCATACCAAAG 4983 >seq194669 Length=4388 Score = 96.9 bits (106), Expect = 3e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||| || || || ||||||| || |||||||| ||||| || | Sbjct 1992 TGGAGCGCTTCAGTCAGGAAGTACAGGTTCCGGAGGCTCGCTGTTTCTATGGCTTTCAAA 2051 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| ||||| |||||||||||| | || || || || |||||||| | Sbjct 2052 TTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAG 2111 Query 61376 A 61376 | Sbjct 2112 A 2112 >seq2306809 Length=138 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 61193 ATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATT 61252 |||| ||| |||||| |||| |||||||| || || || || || ||||| |||| Sbjct 138 ATTTTATTTCCCATGTGCTGGCTTTCTTTGCAGCAAGTGATGGCATAGTAAATGAAAATT 79 Query 61253 TATTGGAACG-TTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTC 61311 | |||| || ||| || || || || || | | || || ||||||||||| |||||| Sbjct 78 TGGTGGAGCGGTTTTGC-CAAGAAGTTCAGATTACCGAAGCCCGTTGTTTCTATGGCTTC 20 Query 61312 CAGATTGCCATGGAGAA 61328 || ||||||||||| || Sbjct 19 CAAATTGCCATGGAAAA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 382603052341040