Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq3043706 109 2e-19 seq3082680 96.9 1e-15 seq3088057 91.5 5e-14 >seq3043706 Length=1055 Score = 109 bits (120), Expect = 2e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46049 CGAGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCACGTACAGCGGC 46108 || || ||||||||| |||||||| ||||| |||||| ||| || |||||||||| Sbjct 816 CGCGGCCGCATCATCAAGGTGCCGAGCAACTACGACCCGCAAACCCGTGTGTACAGCGGC 875 Query 46109 ATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGCCTGTGGGAC 46168 | ||||| |||| | | ||| | || | | | |||||||||||||| | | ||| Sbjct 876 GTGTGGGATGGCACCTTCAAATCCGCCTGGACCGACAACCCGGCCTGGATCTACTACGAC 935 Query 46169 ATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGATGTGGACAAG 46228 ||||| |||| |||||| ||| | || | || || | | ||||||||| Sbjct 936 CTGCTGCTGCACCAGCGCTATGGCCTCGGCCACTTGCTCAACGCCGGCCAAGTGGACAAG 995 Query 46229 TGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGG 46278 |||| |||||| ||| | ||||||||||||||| ||| | ||||| Sbjct 996 TGGGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCGGATGG 1045 >seq3082680 Length=2560 Score = 96.9 bits (106), Expect = 1e-15 Identities = 126/173 (73%), Gaps = 6/173 (3%) Strand=Plus/Plus Query 26283 GCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATCAAC 26342 |||||||| || |||||||| ||||||||| |||| |||||||| ||||| ||||| Sbjct 1256 GCTGAAAACGATGCTCTGCGTCTCGATGTTGCCACTGGCCGTAAGCGGTTGCGGCTCAAC 1315 Query 26343 GCCACCTGCTCCGGTACCGTGCGTGAAGCCA---CCGGCACCTCCGGCGTGGATAATGCA 26399 ||||||||| || | |||| |||| ||||| || |||||||| | ||||| Sbjct 1316 GCCACCTGCAGCGCCCCAGTGC---CCGCCAGTGCCGGCGCCGGCGGCGTGGCTCATGCA 1372 Query 26400 ACCGGCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCATCCTCAGAGA 26452 | | | || ||| ||| |||| | ||||||||||| ||||||||| Sbjct 1373 AGCACCGCCGAACTCACAGCAGACGCTCGATCGGATTATTTCACCCTCAGAGA 1425 >seq3088057 Length=7030 Score = 91.5 bits (100), Expect = 5e-14 Identities = 152/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 46102 CAGCGGCATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGCCT 46161 || ||||||||||||||||| | | ||| ||| |||| ||||||||| || ||| | Sbjct 5605 CAACGGCATCTGGGACGGCACCTTCAAAGAGGCCTACACCAACAACCCTGCGTGGGTGTT 5664 Query 46162 GTGGGACATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGATGT 46221 | ||| || || ||||| ||||||| | || | ||| | | || || || Sbjct 5665 TTATGACCTGGTGCTGCACCCTTACTACGGCCTCGGCGATCGCATCGATGCCACGATGGT 5724 Query 46222 GGACAAGTGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGGTTT 46281 || ||| |||| ||| ||| ||||| |||||||| |||||||| || ||||| Sbjct 5725 TGATCGCTGGTCGCTTTATCGCATCGCGCAATACTGCGATCAGATGGTGCCGGATGGAAA 5784 Query 46282 CGGGGGCACAGAGCCGCGGATGACCTTTAATGCGTACCTG 46321 || |||| |||||||| | |||| || ||||||| Sbjct 5785 AGGCGGCATGGAGCCGCGCTTTACCTGCAACCTGTACCTG 5824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 169107277615356