Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_011356.1
Length=54896
Score E
Sequences producing significant alignments: (Bits) Value
seq3043706 109 2e-19
seq3082680 96.9 1e-15
seq3088057 91.5 5e-14
>seq3043706
Length=1055
Score = 109 bits (120), Expect = 2e-19
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 46049 CGAGGTCGCATCATCCAGGTGCCGTCAAACTATGACCCGGAAAAACGCACGTACAGCGGC 46108
|| || ||||||||| |||||||| ||||| |||||| ||| || ||||||||||
Sbjct 816 CGCGGCCGCATCATCAAGGTGCCGAGCAACTACGACCCGCAAACCCGTGTGTACAGCGGC 875
Query 46109 ATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGCCTGTGGGAC 46168
| ||||| |||| | | ||| | || | | | |||||||||||||| | | |||
Sbjct 876 GTGTGGGATGGCACCTTCAAATCCGCCTGGACCGACAACCCGGCCTGGATCTACTACGAC 935
Query 46169 ATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGATGTGGACAAG 46228
||||| |||| |||||| ||| | || | || || | | |||||||||
Sbjct 936 CTGCTGCTGCACCAGCGCTATGGCCTCGGCCACTTGCTCAACGCCGGCCAAGTGGACAAG 995
Query 46229 TGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGG 46278
|||| |||||| ||| | ||||||||||||||| ||| | |||||
Sbjct 996 TGGGAGCTGTACCGCATCGGCCAGTACTGCGACCAGCCGGTGTCGGATGG 1045
>seq3082680
Length=2560
Score = 96.9 bits (106), Expect = 1e-15
Identities = 126/173 (73%), Gaps = 6/173 (3%)
Strand=Plus/Plus
Query 26283 GCTGAAAATGAAACTCTGCGTGCTGATGTTGCCGCTGGTCGTAAGCGCCTGCGGATCAAC 26342
|||||||| || |||||||| ||||||||| |||| |||||||| ||||| |||||
Sbjct 1256 GCTGAAAACGATGCTCTGCGTCTCGATGTTGCCACTGGCCGTAAGCGGTTGCGGCTCAAC 1315
Query 26343 GCCACCTGCTCCGGTACCGTGCGTGAAGCCA---CCGGCACCTCCGGCGTGGATAATGCA 26399
||||||||| || | |||| |||| ||||| || |||||||| | |||||
Sbjct 1316 GCCACCTGCAGCGCCCCAGTGC---CCGCCAGTGCCGGCGCCGGCGGCGTGGCTCATGCA 1372
Query 26400 ACCGGCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCATCCTCAGAGA 26452
| | | || ||| ||| |||| | ||||||||||| |||||||||
Sbjct 1373 AGCACCGCCGAACTCACAGCAGACGCTCGATCGGATTATTTCACCCTCAGAGA 1425
>seq3088057
Length=7030
Score = 91.5 bits (100), Expect = 5e-14
Identities = 152/220 (69%), Gaps = 0/220 (0%)
Strand=Plus/Plus
Query 46102 CAGCGGCATCTGGGACGGCAGCCTGAAACCGGCATACAGCAACAACCCGGCCTGGTGCCT 46161
|| ||||||||||||||||| | | ||| ||| |||| ||||||||| || ||| |
Sbjct 5605 CAACGGCATCTGGGACGGCACCTTCAAAGAGGCCTACACCAACAACCCTGCGTGGGTGTT 5664
Query 46162 GTGGGACATGCTGACTCACCCGCGCTACGGCATGGGAAAACGCCTGGGGGCGGCGGATGT 46221
| ||| || || ||||| ||||||| | || | ||| | | || || ||
Sbjct 5665 TTATGACCTGGTGCTGCACCCTTACTACGGCCTCGGCGATCGCATCGATGCCACGATGGT 5724
Query 46222 GGACAAGTGGGCGCTGTATGCCATTGCGCAGTACTGCGACCAGATGGTCCCTGATGGTTT 46281
|| ||| |||| ||| ||| ||||| |||||||| |||||||| || |||||
Sbjct 5725 TGATCGCTGGTCGCTTTATCGCATCGCGCAATACTGCGATCAGATGGTGCCGGATGGAAA 5784
Query 46282 CGGGGGCACAGAGCCGCGGATGACCTTTAATGCGTACCTG 46321
|| |||| |||||||| | |||| || |||||||
Sbjct 5785 AGGCGGCATGGAGCCGCGCTTTACCTGCAACCTGTACCTG 5824
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 169107277615356
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |