Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_023503.1 Length=48800 Score E Sequences producing significant alignments: (Bits) Value seq3000272 183 9e-42 seq2951527 113 1e-20 seq194663 87.8 5e-13 >seq3000272 Length=665 Score = 183 bits (202), Expect = 9e-42 Identities = 284/402 (71%), Gaps = 3/402 (1%) Strand=Plus/Plus Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580 ||||| |||||| | |||||||| || ||||||| |||||||||||| |||||| Sbjct 7 TACCCGATCATCTCGATCGAAGACGGCCTGGACGAGTCCGACTGGGACGGCTGGAAAATC 66 Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640 || || || | || | ||| | || ||||| || |||||| | ||||| || ||| Sbjct 67 CTCACCGACAAGATCGGCGAGAAAATCCAGTTGGTGGGCGACGACCTGTTCGTGACCAAC 126 Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT-GCTAACTCAATCCTTATCAAAGT 2699 || ||| || | || || | | || | | | || ||||| ||||| ||||| | Sbjct 127 ACCAAGATCCTGAAAGAGGGCATCG-ACAAGAAGATCGCCAACTCGATCCTGATCAAGTT 185 Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759 ||||| ||||| || ||||| ||||| | || || ||| | ||||| || | || || Sbjct 186 CAACCAGATCGGCACCTTGACCGAAACCCTGGAAGCCATCCAGATGGCCAAGGCTGCGGG 245 Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819 ||||| || || | || ||||| || || ||||| |||||||| || || || || | Sbjct 246 CTACACTGCCGTGATCTCCCACCGCTCCGGCGAAACCGAAGATTCCACCATTGCCGACCT 305 Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879 || || | ||| || || || || ||||| ||||| ||| ||| | ||||| | Sbjct 306 GGCCGTGGGCACTTCGGCGGGCCAGATCAAGACCGGTTCCCTGTGCCGTTCCGACCGCGT 365 Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGG 2921 | | || |||||||||||||| || |||||||| ||| |||| Sbjct 366 TTCCAAGTACAACCAATTGCTGCGCATCGAAGAGCAA-TTGG 406 >seq2951527 Length=450 Score = 113 bits (124), Expect = 1e-20 Identities = 157/219 (72%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 2703 CCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATA 2762 ||| ||||| || |||| ||||| | || || ||| | ||||| || | || || || Sbjct 450 CCAGATCGGCACCCTGACCGAAACCCTGGAAGCCATCCAGATGGCCAAGGCTGCGGGCTA 391 Query 2763 CACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGC 2822 ||| || || | || ||||| || || ||||| ||||| || || || || || | || Sbjct 390 CACCGCCGTGATCTCCCACCGCTCCGGCGAAACCGAAGACTCGACCATTGCCGACCTGGC 331 Query 2823 AGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGC 2882 || | || ||||| || || ||||| ||||| ||| ||| | ||||| || | Sbjct 330 CGTGGGCACCTCGGCTGGGCAGATCAAGACCGGTTCCCTGTGCCGTTCCGACCGCGTTTC 271 Query 2883 TAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGG 2921 || |||||||||||||| ||||||||||| ||| |||| Sbjct 270 CAAGTACAACCAATTGCTGCGTATCGAAGAGCAA-TTGG 233 >seq194663 Length=5596 Score = 87.8 bits (96), Expect = 5e-13 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 2776 TCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAAC 2835 || ||||| || || ||||| |||||||| || || || || | || || | || Sbjct 4850 TCGCACCGCTCCGGCGAAACCGAAGATTCGACCATTGCCGACCTGGCTGTGGGCACCTCG 4791 Query 2836 GCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAA 2895 || || || || ||||| ||||| ||| ||| | ||||| || | || ||||||||| Sbjct 4790 GCGGGCCAGATCAAGACCGGTTCGCTGTGCCGTTCCGACCGCGTTTCCAAGTACAACCAA 4731 Query 2896 TTGCTTCGTATCGAAGACCAACT 2918 ||||| ||||||||||| ||||| Sbjct 4730 TTGCTGCGTATCGAAGAGCAACT 4708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150315525011484