Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_023503.1
Length=48800
Score E
Sequences producing significant alignments: (Bits) Value
seq3000272 183 9e-42
seq2951527 113 1e-20
seq194663 87.8 5e-13
>seq3000272
Length=665
Score = 183 bits (202), Expect = 9e-42
Identities = 284/402 (71%), Gaps = 3/402 (1%)
Strand=Plus/Plus
Query 2521 TACCCAATCATCACTATCGAAGATGGTATGGACGAAAACGACTGGGACGGTTGGAAATCT 2580
||||| |||||| | |||||||| || ||||||| |||||||||||| ||||||
Sbjct 7 TACCCGATCATCTCGATCGAAGACGGCCTGGACGAGTCCGACTGGGACGGCTGGAAAATC 66
Query 2581 CTTACTGAACGTCTTGGTGGTAAAGTTCAATTGGTTGGTGACGACTTCTTCGTAACTAAC 2640
|| || || | || | ||| | || ||||| || |||||| | ||||| || |||
Sbjct 67 CTCACCGACAAGATCGGCGAGAAAATCCAGTTGGTGGGCGACGACCTGTTCGTGACCAAC 126
Query 2641 ACTGCTTACCTTGAAAAAGGTATTGCAGAACACGCT-GCTAACTCAATCCTTATCAAAGT 2699
|| ||| || | || || | | || | | | || ||||| ||||| ||||| |
Sbjct 127 ACCAAGATCCTGAAAGAGGGCATCG-ACAAGAAGATCGCCAACTCGATCCTGATCAAGTT 185
Query 2700 TAACCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGG 2759
||||| ||||| || ||||| ||||| | || || ||| | ||||| || | || ||
Sbjct 186 CAACCAGATCGGCACCTTGACCGAAACCCTGGAAGCCATCCAGATGGCCAAGGCTGCGGG 245
Query 2760 ATACACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATAT 2819
||||| || || | || ||||| || || ||||| |||||||| || || || || |
Sbjct 246 CTACACTGCCGTGATCTCCCACCGCTCCGGCGAAACCGAAGATTCCACCATTGCCGACCT 305
Query 2820 TGCAGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTAT 2879
|| || | ||| || || || || ||||| ||||| ||| ||| | ||||| |
Sbjct 306 GGCCGTGGGCACTTCGGCGGGCCAGATCAAGACCGGTTCCCTGTGCCGTTCCGACCGCGT 365
Query 2880 TGCTAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGG 2921
| | || |||||||||||||| || |||||||| ||| ||||
Sbjct 366 TTCCAAGTACAACCAATTGCTGCGCATCGAAGAGCAA-TTGG 406
>seq2951527
Length=450
Score = 113 bits (124), Expect = 1e-20
Identities = 157/219 (72%), Gaps = 1/219 (0%)
Strand=Plus/Minus
Query 2703 CCAAATCGGTACTTTGACTGAAACTTTTGACGCTATCGAAATGGCGAAAGAAGCTGGATA 2762
||| ||||| || |||| ||||| | || || ||| | ||||| || | || || ||
Sbjct 450 CCAGATCGGCACCCTGACCGAAACCCTGGAAGCCATCCAGATGGCCAAGGCTGCGGGCTA 391
Query 2763 CACAGCAGTAGTATCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGC 2822
||| || || | || ||||| || || ||||| ||||| || || || || || | ||
Sbjct 390 CACCGCCGTGATCTCCCACCGCTCCGGCGAAACCGAAGACTCGACCATTGCCGACCTGGC 331
Query 2823 AGTTGCAACTAACGCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGC 2882
|| | || ||||| || || ||||| ||||| ||| ||| | ||||| || |
Sbjct 330 CGTGGGCACCTCGGCTGGGCAGATCAAGACCGGTTCCCTGTGCCGTTCCGACCGCGTTTC 271
Query 2883 TAAATACAACCAATTGCTTCGTATCGAAGACCAACTTGG 2921
|| |||||||||||||| ||||||||||| ||| ||||
Sbjct 270 CAAGTACAACCAATTGCTGCGTATCGAAGAGCAA-TTGG 233
>seq194663
Length=5596
Score = 87.8 bits (96), Expect = 5e-13
Identities = 105/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 2776 TCACACCGTTCAGGTGAAACTGAAGATTCAACAATCGCTGATATTGCAGTTGCAACTAAC 2835
|| ||||| || || ||||| |||||||| || || || || | || || | ||
Sbjct 4850 TCGCACCGCTCCGGCGAAACCGAAGATTCGACCATTGCCGACCTGGCTGTGGGCACCTCG 4791
Query 2836 GCTGGTCAAATTAAGACAGGTTCATTGTCACGTACTGACCGTATTGCTAAATACAACCAA 2895
|| || || || ||||| ||||| ||| ||| | ||||| || | || |||||||||
Sbjct 4790 GCGGGCCAGATCAAGACCGGTTCGCTGTGCCGTTCCGACCGCGTTTCCAAGTACAACCAA 4731
Query 2896 TTGCTTCGTATCGAAGACCAACT 2918
||||| ||||||||||| |||||
Sbjct 4730 TTGCTGCGTATCGAAGAGCAACT 4708
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150315525011484
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |