Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_029107.1
Length=41941
Score E
Sequences producing significant alignments: (Bits) Value
seq277625 98.7 3e-16
seq3084832 89.7 1e-13
>seq277625
Length=52836
Score = 98.7 bits (108), Expect = 3e-16
Identities = 116/157 (74%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 12441 GGCATCCGTGCCATCGCCTGCGTCCTGCTGAACTACCGTGTCAAGACCGGCATGCCGGGC 12500
|||||||| ||| | | | | ||| | |||||||||| ||| ||| ||||| |||
Sbjct 31845 GGCATCCGCGCCCTGGGCAAGCTGCTGATCAACTACCGTGGCAAAGACGGTATGCCCGGC 31786
Query 12501 ATCGGCGACAAGGGCATCGACACCATGCGCGAGATCGTTTCCCGCTGGGCGCCGCCCAAC 12560
| |||| | |||||||||||| ||||||| | | | || | |||||||| ||||
Sbjct 31785 GTGGGCGGCCCAGGCATCGACACCGTGCGCGAAACCATCACCAGATGGGCGCCAGGCAAC 31726
Query 12561 GAGAACGACACCGAGGCGTACATCACCAGCGTGGCCC 12597
|||||| |||||||||| ||||| | ||||||||
Sbjct 31725 GAGAACAACACCGAGGCCTACATTGCGGCCGTGGCCC 31689
>seq3084832
Length=3091
Score = 89.7 bits (98), Expect = 1e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 12441 GGCATCCGTGCCATCGCCTGCGTCCTGCTGAACTACCGTGTCAAGACCGGCATGCCGGGC 12500
|| ||||| ||| ||| | | ||| | |||||||| | ||| ||||||||| |||
Sbjct 1025 GGTATCCGCGCCCTCGGCAAGCTGCTGATCAACTACCGCGGCAAAGACGGCATGCCCGGC 1084
Query 12501 ATCGGCGACAAGGGCATCGACACCATGCGCGAGATCGTTTCCCGCTGGGCGCCGCCCAAC 12560
| || | | ||||||||||| ||||||| | | || | ||||||||| ||||
Sbjct 1085 GTGGGTGGCGCTGGCATCGACACGGTGCGCGAAACTATCACCAGGTGGGCGCCGGGCAAC 1144
Query 12561 GAGAACGACACCGAGGCGTACATCACCAGCGTGGCCC 12597
|||||| |||||||||| ||||| | ||||||||
Sbjct 1145 GAGAACAACACCGAGGCCTACATAGCGGCCGTGGCCC 1181
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 129171720695546
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |