Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_029107.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq277625 98.7 3e-16 seq3084832 89.7 1e-13 >seq277625 Length=52836 Score = 98.7 bits (108), Expect = 3e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 12441 GGCATCCGTGCCATCGCCTGCGTCCTGCTGAACTACCGTGTCAAGACCGGCATGCCGGGC 12500 |||||||| ||| | | | | ||| | |||||||||| ||| ||| ||||| ||| Sbjct 31845 GGCATCCGCGCCCTGGGCAAGCTGCTGATCAACTACCGTGGCAAAGACGGTATGCCCGGC 31786 Query 12501 ATCGGCGACAAGGGCATCGACACCATGCGCGAGATCGTTTCCCGCTGGGCGCCGCCCAAC 12560 | |||| | |||||||||||| ||||||| | | | || | |||||||| |||| Sbjct 31785 GTGGGCGGCCCAGGCATCGACACCGTGCGCGAAACCATCACCAGATGGGCGCCAGGCAAC 31726 Query 12561 GAGAACGACACCGAGGCGTACATCACCAGCGTGGCCC 12597 |||||| |||||||||| ||||| | |||||||| Sbjct 31725 GAGAACAACACCGAGGCCTACATTGCGGCCGTGGCCC 31689 >seq3084832 Length=3091 Score = 89.7 bits (98), Expect = 1e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 12441 GGCATCCGTGCCATCGCCTGCGTCCTGCTGAACTACCGTGTCAAGACCGGCATGCCGGGC 12500 || ||||| ||| ||| | | ||| | |||||||| | ||| ||||||||| ||| Sbjct 1025 GGTATCCGCGCCCTCGGCAAGCTGCTGATCAACTACCGCGGCAAAGACGGCATGCCCGGC 1084 Query 12501 ATCGGCGACAAGGGCATCGACACCATGCGCGAGATCGTTTCCCGCTGGGCGCCGCCCAAC 12560 | || | | ||||||||||| ||||||| | | || | ||||||||| |||| Sbjct 1085 GTGGGTGGCGCTGGCATCGACACGGTGCGCGAAACTATCACCAGGTGGGCGCCGGGCAAC 1144 Query 12561 GAGAACGACACCGAGGCGTACATCACCAGCGTGGCCC 12597 |||||| |||||||||| ||||| | |||||||| Sbjct 1145 GAGAACAACACCGAGGCCTACATAGCGGCCGTGGCCC 1181 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 129171720695546