Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031120.1 Length=241147 Score E Sequences producing significant alignments: (Bits) Value seq2871653 95.1 2e-14 seq2871652 86.0 9e-12 >seq2871653 Length=292 Score = 95.1 bits (104), Expect = 2e-14 Identities = 127/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243 ||||| ||||||||| | ||||| ||||| || ||| | |||| | |||||| Sbjct 23 GACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCATTTCAAGAGCATCGCCAACGAACTG 82 Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303 | ||| | | | || ||||||||||||||| || || || ||||| || ||| Sbjct 83 ATCTGGATGTTGAGTGGCAACACCAACATCAAGTGGCTCAACGAAAACGGCGTGAAAATC 142 Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGG 196360 ||| |||| ||||| | |||| ||| ||||||| ||||| ||||| |||||||| Sbjct 143 TGGGACGAATGGGCCACCGAAGACGGCGACCTGGGCCCGGTGTACGGCGAGCAGTGG 199 >seq2871652 Length=292 Score = 86.0 bits (94), Expect = 9e-12 Identities = 125/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 196184 GACGGATTCCCGCTGGTCACCACGAAGAAACTCCATCTGCGTTCCATCATTCATGAACTG 196243 ||||| ||||||||| | ||||| ||||| || ||| | |||| | ||| || Sbjct 23 GACGGCTTCCCGCTGCTGACCACCAAGAAGCTTCATTTCAAAAGCATCGCCAACGAATTG 82 Query 196244 CTGTGGTTCCTCAACGGGGACACCAACATCAAGTACCTGAATGACAACGGTGTCTCTATC 196303 | ||| | | | || | ||||||||||||| ||||| || ||||| || ||| Sbjct 83 ATCTGGATGTTGAGTGGCAATACCAACATCAAGTGGCTGAACGAAAACGGCGTGAAAATC 142 Query 196304 TGGAACGAGTGGGCGAACGAACTCGGTAACCTGGGGCCGGTTTACGGTAAGCAGTGG 196360 ||| |||| ||||| | |||| ||| |||| || ||||| ||||| |||||||| Sbjct 143 TGGGACGAATGGGCCACCGAAGACGGCGACCTCGGCCCGGTATACGGCGAGCAGTGG 199 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741755935132920