Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq3088379 569 1e-157 seq3048559 170 9e-38 seq2563683 163 1e-35 seq2559636 154 7e-33 seq277625 113 2e-20 >seq3088379 Length=10556 Score = 569 bits (630), Expect = 1e-157 Identities = 1032/1486 (69%), Gaps = 53/1486 (4%) Strand=Plus/Plus Query 38610 ATTCAGCTGTTGCCACACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTG 38669 || ||||| | || ||||||||||| |||||||||||||| || || |||||||| Sbjct 604 ATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAGCGTCAGCTGATCACGCTC 663 Query 38670 GAGCCGTGGCAGCTCTTTGTGATCTGCTGCG-CGTTTGGCTGGGTCAATAA--AGGCTCC 38726 ||||| |||||||| |||| | || | | | || |||||||| || || ||| | Sbjct 664 GAGCCTTGGCAGCTTTTTGGCCTA-GCCGTGACATTCGGCTGGGTAAAGAAGAAGGG--C 720 Query 38727 CGGCTGCGCCGCTTCCGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCA 38786 ||| ||||| ||||| || || ||| | ||| | || ||||||||||||| Sbjct 721 GGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTT 780 Query 38787 ATCTCTGCCGGTG---TTGCCCT--GTATTGTT--TTGCCTGTGATAACGAGTTTGGCGC 38839 | |||||||| ||| | | | || ||| | ||| ||| |||||| ||||| Sbjct 781 GT---TGCCGGTGGCGTTGGCATCAGCAT-GTTCGTCGCC---GATGGCGAGTTCGGCGC 833 Query 38840 GGAAGTGTATTCCGGTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCG 38899 || ||||| | || || || || ||||||||||| ||||| || || || || || Sbjct 834 CGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAA 893 Query 38900 ACTGATGTGTAAACGCACACCC-ATGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT 38958 |||||| || | | | ||| ||||||| | || ||| || ||||| ||||||| Sbjct 894 GCTGATG-GTCAGCAAATCCCCGATGCTGATTCAGGCCGCCGGCATCGAGGTGAACGCCT 952 Query 38959 CAAACATGAACCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTG 39018 | || |||||| ||| || | || || || || |||||||||||||| || | Sbjct 953 CGAATATGAACATCCCGTCCGACTTCAGTCGCTTCGAGCCACTGATCGGTAACCCTGGCG 1012 Query 39019 ATGGTTCATCACCCCACTGTGCTGTGGTGGATGAATATCACGAGCATGCCACAGATGCAC 39078 | || |||| || ||| || | || || || || ||||| || | || |||| Sbjct 1013 ACGGCGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCAC 1072 Query 39079 TTTACACCACGATGCTTACCGGGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCA 39138 ||| ||| ||||| || ||||||||||| || |||||||||||||||| ||||| Sbjct 1073 AGTACGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCA 1132 Query 39139 CCACCGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAGCGGCGGGAAGTCATCGAGA 39198 |||||||||| | ||||||| || ||||||||||||||||| || | ||| |||||| Sbjct 1133 CCACCGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGCCGCCAGGTCGTCGAGA 1192 Query 39199 TGCTCAACGGCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAG 39258 ||||| ||| | ||||| | || || | ||||| |||| || |||| || | Sbjct 1193 TGCTCGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAGG 1252 Query 39259 GTGACGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGG 39318 | |||||||||||||| ||| || |||||| || ||||| || || ||||| |||| Sbjct 1253 GCGACGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCGAACCACGGCGTCTCGG 1312 Query 39319 TTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAA 39378 | | || || | | ||||||||| | || | || ||| | || | Sbjct 1313 TGTTTCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGCTCTGCGCGTTTTGCCA 1372 Query 39379 ACGTCTTTAAAACAAAACACCTCAATATCTGGGTG-TCGGCGCGTTCGGCGTATTTCAAC 39437 || || ||||| || |||||||| |||||||| || | || |||| | || |||| Sbjct 1373 ACACATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAGTCCGGC-TTTTACAAC 1431 Query 39438 CTGGTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCAG 39497 ||| |||||| | |||||| || | || |||||||| ||||||||||||||||| Sbjct 1432 ATGGAAAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAGCAGTTCGAGGGGCAA 1491 Query 39498 CCGTGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTT 39557 ||| || | ||| ||| ||||||| ||||| ||||||||| || || || | | Sbjct 1492 GAGTGGATAGCCGGCTTCGACTTGGCGCGCAAGCTCGATATGAAC-TCAAGG-GCCAGGT 1549 Query 39558 TATACCCGCGAG--ATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGTTTCTGGG 39615 | | | ||| | |||||||| || | || |||||||| | || ||| ||||||| Sbjct 1550 TGTTCTGGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGCTCCGAAATTCTGGG 1609 Query 39616 TACCGTATGACACGGTGTACAGCGTCGAGAAAAATGAAGATCGCCGGACAGCCGAACGCT 39675 | || |||||||| | | || | ||| || || || | || || || | Sbjct 1610 TCCCTTATGACACCGCCTTCAACACCGATAACAA---------GCGCATGGCTGAGCGTT 1660 Query 39676 TTCAGAAATGGGTGGA----AATGGGCGTTCTGACTGTTACCGCTGGTGCGGAGGTGGAT 39731 | ||| ||| | | || || |||| ||| |||| ||||||||||| || Sbjct 1661 TCCAGGCCTGGATTCACTCCAA---GC-ATCTGGATGTGACCGACGGTGCGGAGGTCGAC 1716 Query 39732 TATCGCTACATCCTCGAGGAGGCCAAAGCGGCGAACAA--AATCAGCCCGGTCAGTGAGT 39789 || ||| | ||||| ||||| |||| | ||||||| | || | ||| || | || | Sbjct 1717 TACCGCGAAATCCTTGAGGACACCAAGGAGGCGAACCACCAAGC--CCCTGTGCGCGAAT 1774 Query 39790 CACCCATCGACCCCTTCGGGGCGACCGGGCTGTCGCATGACCTTGCTGATGAAGACCTGA 39849 || || ||||| || || || || ||| |||||||||| ||| | | | | Sbjct 1775 GCCCAATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTCA 1834 Query 39850 ACCCCATCACCATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAG 39909 | || ||||||||| |||||||||||||||||||| |||||||||||||||||||| | Sbjct 1835 ATCCGGTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAGG 1894 Query 39910 CGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCG 39969 | ||||| || | || || || |||||||||||||| || |||||||||||||| ||| Sbjct 1895 CCGCGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTCG 1954 Query 39970 GCAACGTAGTCGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCTGTCAAGGAGC 40029 ||||||| ||||||| | | | || ||||||||||| | ||| || |||| || Sbjct 1955 GCAACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTGCGCCCGATCAAACAG- 2013 Query 40030 AGGCG--GAAAATAAAATCGATGGTGCAGTTGCACTGATTATGGCG 40073 |||| || || || ||||| || || || || ||||||||| || Sbjct 2014 -GGCGATGACAACAAGATCGACGGCGCTGTCGCGCTGATTATGACG 2058 Score = 224 bits (248), Expect = 5e-54 Identities = 279/377 (74%), Gaps = 9/377 (2%) Strand=Plus/Plus Query 115 TCTGACTGTTACCGCTGGTGCGGAGGTGGATTATCGCTACATCCTCGAGGAGGCCAAAGC 174 |||| ||| |||| ||||||||||| || || ||| | ||||| ||||| |||| | Sbjct 1686 TCTGGATGTGACCGACGGTGCGGAGGTCGACTACCGCGAAATCCTTGAGGACACCAAGGA 1745 Query 175 GGCGAACAA--AATCAGCCCGGTCAGTGAGCACCCA-TCGACCCCTTCGGGGCGACCGGG 231 ||||||| | || | ||| || | || |||| | ||||| || || || || Sbjct 1746 GGCGAACCACCAAGC--CCCTGTGCGCGAATGCCCAATTGACCCTCATGGCGCAACAGGC 1803 Query 232 CTGTCGCATGACCTTGCTGATGAAGACCTGAACCCCATCACCATCATTCAGAACTACACC 291 ||| |||||||||| ||| | | | || || ||||||||| |||||||||||| Sbjct 1804 CTGAGTCATGACCTTGATGACCAGGGTTTCAATCCGGTCACCATCACGCAGAACTACACC 1863 Query 292 AACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCAT 351 |||||||| |||||||||||||||||||| || ||||| || | || || || |||||| Sbjct 1864 AACATGTCGGATCCGATGAAAGAGCTGGAGGCCGCGATAGAGGCTGGCCGTTTCCATCAT 1923 Query 352 GACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTAGTCGGCAAAACCATTCCGGGT 411 |||||||| || |||||||||||||| |||||||||| ||||||| | | | || ||| Sbjct 1924 GACGGCAACCCGATCATGACCTGGTGCGTCGGCAACGTGATCGGCAAGAACTTGCCCGGT 1983 Query 412 AACGATGATGTGGTGAAGCCTGTCAAGGAGCAGGCG--GAAAATAAAATCGATGGTGCAG 469 |||||||| | ||| || |||| || |||| || || || ||||| || || | Sbjct 1984 AACGATGACATCGTGCGCCCGATCAAACAG--GGCGATGACAACAAGATCGACGGCGCTG 2041 Query 470 TTGCACTGATTATGGCG 486 | || ||||||||| || Sbjct 2042 TCGCGCTGATTATGACG 2058 >seq3048559 Length=1123 Score = 170 bits (188), Expect = 9e-38 Identities = 160/204 (78%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 68627 GAGGTGCTGCATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCC 68686 ||||||| || ||||||||| || ||||| |||||||| |||| || || ||||| Sbjct 333 GAGGTGCCGCGTGAGCATGGGCCTTATGGTCGCCGCGATGAAGCTTCGTGTCGGCAATCC 392 Query 68687 ATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTG 68746 |||||| || || || ||||||||||||||||| || |||||||| ||||||||||| Sbjct 393 ATTGCGCAAGCTTGTCCTGATCAAGCTGGCTGACAACGCCAGCGACATAGGTGAGTGCTG 452 Query 68747 GCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCA 68806 ||| ||| |||||| | |||||||||||||| || ||||| || || || ||||| || Sbjct 453 GCCGTCCTATCAGCATGTCGCTGACCAGTGCGAAATCAGCAAGCGATCAGTAATGAACCA 512 Query 68807 TATTGCGGCCCTTTGTGAGTCCGG 68830 || | ||||| ||||| |||| Sbjct 513 CATCACCGCCCTGTGTGAAGCCGG 536 >seq2563683 Length=175 Score = 163 bits (180), Expect = 1e-35 Identities = 140/173 (81%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 68625 CGGAGGTGCTGCATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 68684 ||||||||| |||||||||||| || ||||| ||||||||| |||| || |||||| Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115 Query 68685 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 68744 ||| |||| || ||||| ||||||||| |||| || || |||||||| ||||||||| Sbjct 114 CCACTGCGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTTGGTGAGTGC 55 Query 68745 TGGCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGT 68797 ||||| ||||||||| || || || ||||||||||| ||||| || ||||| Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2 >seq2559636 Length=175 Score = 154 bits (170), Expect = 7e-33 Identities = 138/173 (80%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 68625 CGGAGGTGCTGCATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 68684 ||||||||| |||||||||||| || ||||| ||||||||| |||| || |||||| Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115 Query 68685 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 68744 || | || || ||||| ||||||||| |||| || || |||||||| ||||||||| Sbjct 114 CCTCTACGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTCGGTGAGTGC 55 Query 68745 TGGCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGT 68797 ||||| ||||||||| || || || ||||||||||| ||||| || ||||| Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2 >seq277625 Length=52836 Score = 113 bits (124), Expect = 2e-20 Identities = 115/148 (78%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 68637 ATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGA--GTGGGTAATCCATTGCGAA 68694 ||||||||||| |||||||| || || ||||||| ||| || ||||| || | || | Sbjct 40875 ATGAGCATGGATCTGATGGTCAAGGCCATGAAAA--CGAAGGTCGGTAACCCGCTCCGTA 40818 Query 68695 AACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCT 68754 | |||| ||| ||||| |||| || || ||||| |||||||| ||||||||||| | Sbjct 40817 AGTTGGTGCTGGTCAAGTTGGCCGACAACGCCAGTGATCAGGGCGAGTGCTGGCCGTCGT 40758 Query 68755 ACCAGCATATTGCTGACCAGTGCGAGAT 68782 ||||||| ||||| || || || ||||| Sbjct 40757 ACCAGCACATTGCCGATCAATGTGAGAT 40730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 238159929618856