Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= NC_031940.1
Length=77375
Score E
Sequences producing significant alignments: (Bits) Value
seq3088379 569 1e-157
seq3048559 170 9e-38
seq2563683 163 1e-35
seq2559636 154 7e-33
seq277625 113 2e-20
>seq3088379
Length=10556
Score = 569 bits (630), Expect = 1e-157
Identities = 1032/1486 (69%), Gaps = 53/1486 (4%)
Strand=Plus/Plus
Query 38610 ATTCAGCTGTTGCCACACACCAAGGGGGAGTGGGCATTCAAACGGATGCCCATCACGCTG 38669
|| ||||| | || ||||||||||| |||||||||||||| || || ||||||||
Sbjct 604 ATGCAGCTTCTACCGCACACCAAGGGCGAGTGGGCATTCAAGCGTCAGCTGATCACGCTC 663
Query 38670 GAGCCGTGGCAGCTCTTTGTGATCTGCTGCG-CGTTTGGCTGGGTCAATAA--AGGCTCC 38726
||||| |||||||| |||| | || | | | || |||||||| || || ||| |
Sbjct 664 GAGCCTTGGCAGCTTTTTGGCCTA-GCCGTGACATTCGGCTGGGTAAAGAAGAAGGG--C 720
Query 38727 CGGCTGCGCCGCTTCCGGGAGGTGTATACCGAAATCCCCCGTAAGAACGGCAAATCGGCA 38786
||| ||||| ||||| || || ||| | ||| | || |||||||||||||
Sbjct 721 GGGCACCGCCGGTTCCGTGAAAGCTACTGGGAAGTGCCCAGAAAAAACGGCAAATCGGTT 780
Query 38787 ATCTCTGCCGGTG---TTGCCCT--GTATTGTT--TTGCCTGTGATAACGAGTTTGGCGC 38839
| |||||||| ||| | | | || ||| | ||| ||| |||||| |||||
Sbjct 781 GT---TGCCGGTGGCGTTGGCATCAGCAT-GTTCGTCGCC---GATGGCGAGTTCGGCGC 833
Query 38840 GGAAGTGTATTCCGGTGCCACGACAGAGAAACAGGCGTGGGAAGTCTTTCGCCCGGCGCG 38899
|| ||||| | || || || || ||||||||||| ||||| || || || || ||
Sbjct 834 CGAGGTGTACGCAGGGGCGACCACTGAGAAACAGGCCTGGGAGGTTTTCCGGCCTGCCAA 893
Query 38900 ACTGATGTGTAAACGCACACCC-ATGCTGACGGAAGCGTTCGGGATTGAGGTTAACGCCT 38958
|||||| || | | | ||| ||||||| | || ||| || ||||| |||||||
Sbjct 894 GCTGATG-GTCAGCAAATCCCCGATGCTGATTCAGGCCGCCGGCATCGAGGTGAACGCCT 952
Query 38959 CAAACATGAACCGTCCGGAGGATGGCGCGCGGTTTGAACCGCTGATCGGTAACCCCGGTG 39018
| || |||||| ||| || | || || || || |||||||||||||| || |
Sbjct 953 CGAATATGAACATCCCGTCCGACTTCAGTCGCTTCGAGCCACTGATCGGTAACCCTGGCG 1012
Query 39019 ATGGTTCATCACCCCACTGTGCTGTGGTGGATGAATATCACGAGCATGCCACAGATGCAC 39078
| || |||| || ||| || | || || || || ||||| || | || ||||
Sbjct 1013 ACGGCGCATCGCCGAGCTGCGCCATCGTCGACGAGTACCACGAACACCCAACGTCGGCAC 1072
Query 39079 TTTACACCACGATGCTTACCGGGATGGGCGCGCGACGTCAGCCACTGATGTGGGCCATCA 39138
||| ||| ||||| || ||||||||||| || |||||||||||||||| |||||
Sbjct 1073 AGTACGACACCATGCTCACAGGGATGGGCGCCCGGCGTCAGCCACTGATGTTCATCATCA 1132
Query 39139 CCACCGCCGGGTACAACATTGAGGGGCCGTGCTACGACAAGCGGCGGGAAGTCATCGAGA 39198
|||||||||| | ||||||| || ||||||||||||||||| || | ||| ||||||
Sbjct 1133 CCACCGCCGGCGCCGACATTGAAGGCCCGTGCTACGACAAGCGCCGCCAGGTCGTCGAGA 1192
Query 39199 TGCTCAACGGCTCGGTGCCTAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAG 39258
||||| ||| | ||||| | || || | ||||| |||| || |||| || |
Sbjct 1193 TGCTCGCCGGTACCGTGCCGGATGAAGAGTTATTCGGCTGGATCTGGACGCTTGACGAGG 1252
Query 39259 GTGACGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGG 39318
| |||||||||||||| ||| || |||||| || ||||| || || ||||| ||||
Sbjct 1253 GCGACGACTGGACCGATCCGAAGATGCTGGCCAAGGCCAACCCGAACCACGGCGTCTCGG 1312
Query 39319 TTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAA 39378
| | || || | | ||||||||| | || | || ||| | || |
Sbjct 1313 TGTTTCAAGAGTACCTCGAGAGTCAGCAGGCCAGGGCCATCCGCTCTGCGCGTTTTGCCA 1372
Query 39379 ACGTCTTTAAAACAAAACACCTCAATATCTGGGTG-TCGGCGCGTTCGGCGTATTTCAAC 39437
|| || ||||| || |||||||| |||||||| || | || |||| | || ||||
Sbjct 1373 ACACATTCAAAACTAAGCACCTCAACCTCTGGGTGAGCGCCAAGTCCGGC-TTTTACAAC 1431
Query 39438 CTGGTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCAG 39497
||| |||||| | |||||| || | || |||||||| |||||||||||||||||
Sbjct 1432 ATGGAAAGCTGGAAAGCCTGCGAAGACACGTCGCTGACCCTGGAGCAGTTCGAGGGGCAA 1491
Query 39498 CCGTGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTT 39557
||| || | ||| ||| ||||||| ||||| ||||||||| || || || | |
Sbjct 1492 GAGTGGATAGCCGGCTTCGACTTGGCGCGCAAGCTCGATATGAAC-TCAAGG-GCCAGGT 1549
Query 39558 TATACCCGCGAG--ATTGACGGTAAAACGCATTACTACAGTGTGGCCCCGCGTTTCTGGG 39615
| | | ||| | |||||||| || | || |||||||| | || ||| |||||||
Sbjct 1550 TGTTCTGGCGTGTAATTGACGGGAAGAACCACTACTACAGCATTGCTCCGAAATTCTGGG 1609
Query 39616 TACCGTATGACACGGTGTACAGCGTCGAGAAAAATGAAGATCGCCGGACAGCCGAACGCT 39675
| || |||||||| | | || | ||| || || || | || || || |
Sbjct 1610 TCCCTTATGACACCGCCTTCAACACCGATAACAA---------GCGCATGGCTGAGCGTT 1660
Query 39676 TTCAGAAATGGGTGGA----AATGGGCGTTCTGACTGTTACCGCTGGTGCGGAGGTGGAT 39731
| ||| ||| | | || || |||| ||| |||| ||||||||||| ||
Sbjct 1661 TCCAGGCCTGGATTCACTCCAA---GC-ATCTGGATGTGACCGACGGTGCGGAGGTCGAC 1716
Query 39732 TATCGCTACATCCTCGAGGAGGCCAAAGCGGCGAACAA--AATCAGCCCGGTCAGTGAGT 39789
|| ||| | ||||| ||||| |||| | ||||||| | || | ||| || | || |
Sbjct 1717 TACCGCGAAATCCTTGAGGACACCAAGGAGGCGAACCACCAAGC--CCCTGTGCGCGAAT 1774
Query 39790 CACCCATCGACCCCTTCGGGGCGACCGGGCTGTCGCATGACCTTGCTGATGAAGACCTGA 39849
|| || ||||| || || || || ||| |||||||||| ||| | | | |
Sbjct 1775 GCCCAATTGACCCTCATGGCGCAACAGGCCTGAGTCATGACCTTGATGACCAGGGTTTCA 1834
Query 39850 ACCCCATCACCATCATTCAGAACTACACCAACATGTCCGATCCGATGAAAGAGCTGGAAG 39909
| || ||||||||| |||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1835 ATCCGGTCACCATCACGCAGAACTACACCAACATGTCGGATCCGATGAAAGAGCTGGAGG 1894
Query 39910 CGGCGATTGAATCGGGGCGCTTTCATCATGACGGCAATCCCATCATGACCTGGTGTATCG 39969
| ||||| || | || || || |||||||||||||| || |||||||||||||| |||
Sbjct 1895 CCGCGATAGAGGCTGGCCGTTTCCATCATGACGGCAACCCGATCATGACCTGGTGCGTCG 1954
Query 39970 GCAACGTAGTCGGCAAAACCATTCCGGGTAACGATGATGTGGTGAAGCCTGTCAAGGAGC 40029
||||||| ||||||| | | | || ||||||||||| | ||| || |||| ||
Sbjct 1955 GCAACGTGATCGGCAAGAACTTGCCCGGTAACGATGACATCGTGCGCCCGATCAAACAG- 2013
Query 40030 AGGCG--GAAAATAAAATCGATGGTGCAGTTGCACTGATTATGGCG 40073
|||| || || || ||||| || || || || ||||||||| ||
Sbjct 2014 -GGCGATGACAACAAGATCGACGGCGCTGTCGCGCTGATTATGACG 2058
Score = 224 bits (248), Expect = 5e-54
Identities = 279/377 (74%), Gaps = 9/377 (2%)
Strand=Plus/Plus
Query 115 TCTGACTGTTACCGCTGGTGCGGAGGTGGATTATCGCTACATCCTCGAGGAGGCCAAAGC 174
|||| ||| |||| ||||||||||| || || ||| | ||||| ||||| |||| |
Sbjct 1686 TCTGGATGTGACCGACGGTGCGGAGGTCGACTACCGCGAAATCCTTGAGGACACCAAGGA 1745
Query 175 GGCGAACAA--AATCAGCCCGGTCAGTGAGCACCCA-TCGACCCCTTCGGGGCGACCGGG 231
||||||| | || | ||| || | || |||| | ||||| || || || ||
Sbjct 1746 GGCGAACCACCAAGC--CCCTGTGCGCGAATGCCCAATTGACCCTCATGGCGCAACAGGC 1803
Query 232 CTGTCGCATGACCTTGCTGATGAAGACCTGAACCCCATCACCATCATTCAGAACTACACC 291
||| |||||||||| ||| | | | || || ||||||||| ||||||||||||
Sbjct 1804 CTGAGTCATGACCTTGATGACCAGGGTTTCAATCCGGTCACCATCACGCAGAACTACACC 1863
Query 292 AACATGTCCGATCCGATGAAAGAGCTGGAAGCGGCGATTGAATCGGGGCGCTTTCATCAT 351
|||||||| |||||||||||||||||||| || ||||| || | || || || ||||||
Sbjct 1864 AACATGTCGGATCCGATGAAAGAGCTGGAGGCCGCGATAGAGGCTGGCCGTTTCCATCAT 1923
Query 352 GACGGCAATCCCATCATGACCTGGTGTATCGGCAACGTAGTCGGCAAAACCATTCCGGGT 411
|||||||| || |||||||||||||| |||||||||| ||||||| | | | || |||
Sbjct 1924 GACGGCAACCCGATCATGACCTGGTGCGTCGGCAACGTGATCGGCAAGAACTTGCCCGGT 1983
Query 412 AACGATGATGTGGTGAAGCCTGTCAAGGAGCAGGCG--GAAAATAAAATCGATGGTGCAG 469
|||||||| | ||| || |||| || |||| || || || ||||| || || |
Sbjct 1984 AACGATGACATCGTGCGCCCGATCAAACAG--GGCGATGACAACAAGATCGACGGCGCTG 2041
Query 470 TTGCACTGATTATGGCG 486
| || ||||||||| ||
Sbjct 2042 TCGCGCTGATTATGACG 2058
>seq3048559
Length=1123
Score = 170 bits (188), Expect = 9e-38
Identities = 160/204 (78%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 68627 GAGGTGCTGCATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAATCC 68686
||||||| || ||||||||| || ||||| |||||||| |||| || || |||||
Sbjct 333 GAGGTGCCGCGTGAGCATGGGCCTTATGGTCGCCGCGATGAAGCTTCGTGTCGGCAATCC 392
Query 68687 ATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTG 68746
|||||| || || || ||||||||||||||||| || |||||||| |||||||||||
Sbjct 393 ATTGCGCAAGCTTGTCCTGATCAAGCTGGCTGACAACGCCAGCGACATAGGTGAGTGCTG 452
Query 68747 GCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGTGATGAATCA 68806
||| ||| |||||| | |||||||||||||| || ||||| || || || ||||| ||
Sbjct 453 GCCGTCCTATCAGCATGTCGCTGACCAGTGCGAAATCAGCAAGCGATCAGTAATGAACCA 512
Query 68807 TATTGCGGCCCTTTGTGAGTCCGG 68830
|| | ||||| ||||| ||||
Sbjct 513 CATCACCGCCCTGTGTGAAGCCGG 536
>seq2563683
Length=175
Score = 163 bits (180), Expect = 1e-35
Identities = 140/173 (81%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 68625 CGGAGGTGCTGCATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 68684
||||||||| |||||||||||| || ||||| ||||||||| |||| || ||||||
Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115
Query 68685 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 68744
||| |||| || ||||| ||||||||| |||| || || |||||||| |||||||||
Sbjct 114 CCACTGCGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTTGGTGAGTGC 55
Query 68745 TGGCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGT 68797
||||| ||||||||| || || || ||||||||||| ||||| || |||||
Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2
>seq2559636
Length=175
Score = 154 bits (170), Expect = 7e-33
Identities = 138/173 (80%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 68625 CGGAGGTGCTGCATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGAGTGGGTAAT 68684
||||||||| |||||||||||| || ||||| ||||||||| |||| || ||||||
Sbjct 174 CGGAGGTGCAGCATGAGCATGGGCCTTATGGTCGCCGCGATGAAACTTCGCGTCGGTAAT 115
Query 68685 CCATTGCGAAAACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGC 68744
|| | || || ||||| ||||||||| |||| || || |||||||| |||||||||
Sbjct 114 CCTCTACGCAAGCTGGTGCTGATCAAGTTGGCCGACAACGCCAGCGACGTCGGTGAGTGC 55
Query 68745 TGGCCCAGCTACCAGCATATTGCTGACCAGTGCGAGATTAGCAAACGTTCTGT 68797
||||| ||||||||| || || || ||||||||||| ||||| || |||||
Sbjct 54 TGGCCGTCCTACCAGCACATCGCCGATCAGTGCGAGATCAGCAAGCGCTCTGT 2
>seq277625
Length=52836
Score = 113 bits (124), Expect = 2e-20
Identities = 115/148 (78%), Gaps = 4/148 (3%)
Strand=Plus/Minus
Query 68637 ATGAGCATGGAGCTGATGGTTAAAGCGATGAAAATTCGA--GTGGGTAATCCATTGCGAA 68694
||||||||||| |||||||| || || ||||||| ||| || ||||| || | || |
Sbjct 40875 ATGAGCATGGATCTGATGGTCAAGGCCATGAAAA--CGAAGGTCGGTAACCCGCTCCGTA 40818
Query 68695 AACTGGTTCTGATCAAGCTGGCTGATAATGCCAGCGATCAGGGTGAGTGCTGGCCCAGCT 68754
| |||| ||| ||||| |||| || || ||||| |||||||| ||||||||||| |
Sbjct 40817 AGTTGGTGCTGGTCAAGTTGGCCGACAACGCCAGTGATCAGGGCGAGTGCTGGCCGTCGT 40758
Query 68755 ACCAGCATATTGCTGACCAGTGCGAGAT 68782
||||||| ||||| || || || |||||
Sbjct 40757 ACCAGCACATTGCCGATCAATGTGAGAT 40730
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 238159929618856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |