Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq29 165 1e-38 seq1 127 3e-27 seq23 123 4e-26 >seq29 Length=26636480 Score = 165 bits (182), Expect = 1e-38 Identities = 183/238 (77%), Gaps = 12/238 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 26503831 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 26503774 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 || ||| | | || ||||||||| | ||||||||||| |||| ||||| | Sbjct 26503773 CTGGTTCATGGGGAATAATTGCAATTCCCGATCCCCATCAC----AAATGGGGTTCAACG 26503718 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 ||||||| |||| |||| ||| | || || ||| ||||||||||||||| Sbjct 26503717 GGTTACCCGTGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCG 26503658 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||| |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 26503657 TGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 26503601 >seq1 Length=79733107 Score = 127 bits (140), Expect = 3e-27 Identities = 164/222 (74%), Gaps = 11/222 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| |||| ||| |||||| || ||| | Sbjct 596222 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGATCCGCACTTACTGGGGATT-C 596279 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116 || ||| | | || ||||||||| ||||||||||| |||| ||||| | Sbjct 596280 CTTGTTCATGGGGAATAATTGCAATCCCTGATCCCCATCAC----AAATGGGCTTCAACG 596335 Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175 ||| ||| |||| | | ||| | || || ||| |||||||||| ||| Sbjct 596336 GGTTATCCGCGCCTGCCACCATAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCCTGCG 596395 Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| |||| | ||||||||||||||||||||||||||||||| Sbjct 596396 TGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 596437 >seq23 Length=29576853 Score = 123 bits (136), Expect = 4e-26 Identities = 171/234 (73%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || |||||| |||| || |||||| |||||| | Sbjct 547137 GTACAAAGGGCAGGGACTTAATCAAGGCAAGCTTG-TGACCAGCACTTACTGGGAATT-C 547080 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | || ||||||||| | ||||||||| || | ||||| | || Sbjct 547079 CTCCTTCGTGGGGAATAATTGCAATCCCCCTTCCCCATCAGGAATGGAGTTCAACGGGTT 547020 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | |||| ||| ||| | || | ||| |||||||||| || |||| Sbjct 547019 ACCTGTGCCTGCCGGAGTAGGGTAGGCACACACTGAGCCAGTCAGTGTAGCTCGTGTGCA 546960 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 546959 GCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 546907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751977511205