Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq29 165 1e-38
seq1 127 3e-27
seq23 123 4e-26
>seq29
Length=26636480
Score = 165 bits (182), Expect = 1e-38
Identities = 183/238 (77%), Gaps = 12/238 (5%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| |
Sbjct 26503831 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 26503774
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116
|| ||| | | || ||||||||| | ||||||||||| |||| ||||| |
Sbjct 26503773 CTGGTTCATGGGGAATAATTGCAATTCCCGATCCCCATCAC----AAATGGGGTTCAACG 26503718
Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175
||||||| |||| |||| ||| | || || ||| |||||||||||||||
Sbjct 26503717 GGTTACCCGTGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCG 26503658
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
||| |||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 26503657 TGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 26503601
>seq1
Length=79733107
Score = 127 bits (140), Expect = 3e-27
Identities = 164/222 (74%), Gaps = 11/222 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || ||||||| ||||| |||| ||| |||||| || ||| |
Sbjct 596222 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGATCCGCACTTACTGGGGATT-C 596279
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAAAG 116
|| ||| | | || ||||||||| ||||||||||| |||| ||||| |
Sbjct 596280 CTTGTTCATGGGGAATAATTGCAATCCCTGATCCCCATCAC----AAATGGGCTTCAACG 596335
Query 117 A-TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCG 175
||| ||| |||| | | ||| | || || ||| |||||||||| |||
Sbjct 596336 GGTTATCCGCGCCTGCCACCATAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCCTGCG 596395
Query 176 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
||| |||| | |||||||||||||||||||||||||||||||
Sbjct 596396 TGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 596437
>seq23
Length=29576853
Score = 123 bits (136), Expect = 4e-26
Identities = 171/234 (73%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||| || |||||| |||| || |||||| |||||| |
Sbjct 547137 GTACAAAGGGCAGGGACTTAATCAAGGCAAGCTTG-TGACCAGCACTTACTGGGAATT-C 547080
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
||| || | || ||||||||| | ||||||||| || | ||||| | ||
Sbjct 547079 CTCCTTCGTGGGGAATAATTGCAATCCCCCTTCCCCATCAGGAATGGAGTTCAACGGGTT 547020
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||| | |||| ||| ||| | || | ||| |||||||||| || ||||
Sbjct 547019 ACCTGTGCCTGCCGGAGTAGGGTAGGCACACACTGAGCCAGTCAGTGTAGCTCGTGTGCA 546960
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 546959 GCCCCAGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 546907
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751977511205
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |