Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq1 165 1e-38
seq29 149 1e-33
seq23 145 1e-32
seq75 87.8 3e-15
seq3 80.6 5e-13
>seq1
Length=79733107
Score = 165 bits (182), Expect = 1e-38
Identities = 212/288 (74%), Gaps = 6/288 (2%)
Strand=Plus/Minus
Query 35 CCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTA-GA 93
|| ||||| ||| ||| |||| | | || ||| | | |||||||||||||||||| ||
Sbjct 597212 CCTCATGCTCTTAGCTGAGTGTCCTGAGGGGCCGGAGCATTTACTTTGAAAAAATTAAGA 597153
Query 94 GTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGT 150
||||||||||||| || || | |||| ||| |||||||| |||||||| |
Sbjct 597152 GTGTTCAAAGCAGACCCCAGCCACCTGGATACTGCAGCTAGGAATAATGGAATAGGA-GC 597094
Query 151 GCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGT 210
||||||||||||| |||||| | || | | |||||||| ||||| || ||||||
Sbjct 597093 CCGGTTCTATTTTGCTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACAGCCGGGGGC 597034
Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270
| ||||| | |||||||||||||||||||| | ||||| ||| | || ||
Sbjct 597033 ATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGATTGGTGCAAGACGAACCAGAGCAAA 596974
Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318
||| || ||||| |||||||||||||||| |||| ||| | || ||
Sbjct 596973 AGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACAAAAATCAGAGG 596927
>seq29
Length=26636480
Score = 149 bits (164), Expect = 1e-33
Identities = 203/278 (73%), Gaps = 8/278 (3%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| |||| |||| || | ||| | | ||||||||||||||||||| |||
Sbjct 26502900 ATGCTCTTAACTGAGTGTCTCGCTGGGCCTGAGGTGTTTACTTTGAAAAAATTAG--TGT 26502957
Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
||||||||||||| || | |||| ||| |||| ||| ||||||||||| ||
Sbjct 26502958 TCAAAGCAGGCCTGAGCCGCCTGGATACTACAGCTAGGAACAATGGAATAGGACGTT-GG 26503016
Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214
||||||||||||||||| | || | | |||||||| ||||| | |||||| |
Sbjct 26503017 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 26503076
Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274
||||| | |||||||||||||||||| ||||| || | || |||||
Sbjct 26503077 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCAGCACAAGACAGACCAGAGCAAAAGCA 26503136
Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
|| ||||| |||||||||||||||| ||||||||||
Sbjct 26503137 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 26503173
>seq23
Length=29576853
Score = 145 bits (160), Expect = 1e-32
Identities = 183/248 (74%), Gaps = 5/248 (2%)
Strand=Plus/Plus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCAT 130
|||||||||||||| ||||||| ||||||||||||| || | |||| |||
Sbjct 546245 TTTACTTTGAAAAACTTAGAGTTTTCAAAGCAGGCCGGAGCCGCCTGGATACCGCAGCTA 546304
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|||||||| ||||| || ||||| |||||||||||||||| | || | | |||||
Sbjct 546305 GGAATAATGGAATACGAT-TGCGGGTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 546363
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| || |||||| | ||||| || |||||||||||||||||| |
Sbjct 546364 TAAGAGGGACAGCCGGGGGCATTTGTATTGCGCTGCTAGAGGTGAAATTCTTGGACCGGT 546423
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| || | |||| | || ||||| |||||||||||||||| ||||||||
Sbjct 546424 CCAAGACGGACCAGAAAGAAACCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAA 546482
Query 311 GTTAGGGG 318
|| || ||
Sbjct 546483 GTCAGAGG 546490
>seq75
Length=11235442
Score = 87.8 bits (96), Expect = 3e-15
Identities = 129/177 (73%), Gaps = 13/177 (7%)
Strand=Plus/Minus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCAT 130
||||||| |||| ||||| || |||||||||||| || | |||| |||
Sbjct 1933908 TTTACTTCAAAAACATTAGCGT--TCAAAGCAGGCCCAAGCCACCTGGATACCACAGCTG 1933851
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG---TTTCTAGGACCGCCGTAAT 187
|||||||| ||||||||| | |||||||||||||||| || | ||| ||| ||
Sbjct 1933850 GGAATAATGGAATAGGACC-GTGGTTCTATTTTGTTGGCTTTTGCAAGGGAGGCC---AT 1933795
Query 188 GATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243
|||||| ||||| || | ||||| || ||||| | || |||| |||||||||||
Sbjct 1933794 GATTAAGAGGGACAGCTTGGGGGCGTTTGTATTTTACTGCTAGAGATGAAATTCTTG 1933738
>seq3
Length=68426573
Score = 80.6 bits (88), Expect = 5e-13
Identities = 182/270 (67%), Gaps = 13/270 (5%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAA-ATTAGAGTG 96
|||| ||| ||| |||| | |||||| | | | ||||||||| |||| |||| || |
Sbjct 48128315 ATGCTCTTAGCTGAGTGTCCTATGGAGCCCGAAGTATTTACTTTGGAAAATATTAAAGCG 48128374
Query 97 TTCAAAGCAG------GCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGT 150
|| |||||| ||| ||| |||| ||| | ||||||||||||||
Sbjct 48128375 TTTAAAGCAAAATCAAGCCACTGC----ATACCACAGCTAAAACTAATAGAATAGGACCC 48128430
Query 151 GCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGT 210
| | ||| |||||||| || | | || | | ||||||| |||||| | | ||||
Sbjct 48128431 CCTGGTCTGCTTTGTTGGCTTTTGGAACTGGAATTGTGATTAAAAGGGATGGCCCTGGGT 48128490
Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270
| ||||| || ||||||||||||||||| || | |||| || | | |||
Sbjct 48128491 ATTGGTATTATGCTGCTAGAGGTGAAATTCTTGGCCTT-TGCAAGATGGACCAGAGTGAA 48128549
Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCA 300
| | || ||||| |||||| ||||||||
Sbjct 48128550 AACATTTGCCAAGAATGTTTCTATTAATCA 48128579
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915171747776
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |