Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1 165 1e-38 seq29 149 1e-33 seq23 145 1e-32 seq75 87.8 3e-15 seq3 80.6 5e-13 >seq1 Length=79733107 Score = 165 bits (182), Expect = 1e-38 Identities = 212/288 (74%), Gaps = 6/288 (2%) Strand=Plus/Minus Query 35 CCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTA-GA 93 || ||||| ||| ||| |||| | | || ||| | | |||||||||||||||||| || Sbjct 597212 CCTCATGCTCTTAGCTGAGTGTCCTGAGGGGCCGGAGCATTTACTTTGAAAAAATTAAGA 597153 Query 94 GTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGT 150 ||||||||||||| || || | |||| ||| |||||||| |||||||| | Sbjct 597152 GTGTTCAAAGCAGACCCCAGCCACCTGGATACTGCAGCTAGGAATAATGGAATAGGA-GC 597094 Query 151 GCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGT 210 ||||||||||||| |||||| | || | | |||||||| ||||| || |||||| Sbjct 597093 CCGGTTCTATTTTGCTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACAGCCGGGGGC 597034 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| | |||||||||||||||||||| | ||||| ||| | || || Sbjct 597033 ATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGATTGGTGCAAGACGAACCAGAGCAAA 596974 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 ||| || ||||| |||||||||||||||| |||| ||| | || || Sbjct 596973 AGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACAAAAATCAGAGG 596927 >seq29 Length=26636480 Score = 149 bits (164), Expect = 1e-33 Identities = 203/278 (73%), Gaps = 8/278 (3%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| || | ||| | | ||||||||||||||||||| ||| Sbjct 26502900 ATGCTCTTAACTGAGTGTCTCGCTGGGCCTGAGGTGTTTACTTTGAAAAAATTAG--TGT 26502957 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 ||||||||||||| || | |||| ||| |||| ||| ||||||||||| || Sbjct 26502958 TCAAAGCAGGCCTGAGCCGCCTGGATACTACAGCTAGGAACAATGGAATAGGACGTT-GG 26503016 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 26503017 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 26503076 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | || ||||| Sbjct 26503077 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCAGCACAAGACAGACCAGAGCAAAAGCA 26503136 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 26503137 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 26503173 >seq23 Length=29576853 Score = 145 bits (160), Expect = 1e-32 Identities = 183/248 (74%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCAT 130 |||||||||||||| ||||||| ||||||||||||| || | |||| ||| Sbjct 546245 TTTACTTTGAAAAACTTAGAGTTTTCAAAGCAGGCCGGAGCCGCCTGGATACCGCAGCTA 546304 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||| || ||||| |||||||||||||||| | || | | ||||| Sbjct 546305 GGAATAATGGAATACGAT-TGCGGGTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 546363 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| || |||||| | ||||| || |||||||||||||||||| | Sbjct 546364 TAAGAGGGACAGCCGGGGGCATTTGTATTGCGCTGCTAGAGGTGAAATTCTTGGACCGGT 546423 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| || | |||| | || ||||| |||||||||||||||| |||||||| Sbjct 546424 CCAAGACGGACCAGAAAGAAACCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAA 546482 Query 311 GTTAGGGG 318 || || || Sbjct 546483 GTCAGAGG 546490 >seq75 Length=11235442 Score = 87.8 bits (96), Expect = 3e-15 Identities = 129/177 (73%), Gaps = 13/177 (7%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCAT 130 ||||||| |||| ||||| || |||||||||||| || | |||| ||| Sbjct 1933908 TTTACTTCAAAAACATTAGCGT--TCAAAGCAGGCCCAAGCCACCTGGATACCACAGCTG 1933851 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGG---TTTCTAGGACCGCCGTAAT 187 |||||||| ||||||||| | |||||||||||||||| || | ||| ||| || Sbjct 1933850 GGAATAATGGAATAGGACC-GTGGTTCTATTTTGTTGGCTTTTGCAAGGGAGGCC---AT 1933795 Query 188 GATTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||| ||||| || | ||||| || ||||| | || |||| ||||||||||| Sbjct 1933794 GATTAAGAGGGACAGCTTGGGGGCGTTTGTATTTTACTGCTAGAGATGAAATTCTTG 1933738 >seq3 Length=68426573 Score = 80.6 bits (88), Expect = 5e-13 Identities = 182/270 (67%), Gaps = 13/270 (5%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAA-ATTAGAGTG 96 |||| ||| ||| |||| | |||||| | | | ||||||||| |||| |||| || | Sbjct 48128315 ATGCTCTTAGCTGAGTGTCCTATGGAGCCCGAAGTATTTACTTTGGAAAATATTAAAGCG 48128374 Query 97 TTCAAAGCAG------GCCTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGT 150 || |||||| ||| ||| |||| ||| | |||||||||||||| Sbjct 48128375 TTTAAAGCAAAATCAAGCCACTGC----ATACCACAGCTAAAACTAATAGAATAGGACCC 48128430 Query 151 GCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGT 210 | | ||| |||||||| || | | || | | ||||||| |||||| | | |||| Sbjct 48128431 CCTGGTCTGCTTTGTTGGCTTTTGGAACTGGAATTGTGATTAAAAGGGATGGCCCTGGGT 48128490 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| || ||||||||||||||||| || | |||| || | | ||| Sbjct 48128491 ATTGGTATTATGCTGCTAGAGGTGAAATTCTTGGCCTT-TGCAAGATGGACCAGAGTGAA 48128549 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCA 300 | | || ||||| |||||| |||||||| Sbjct 48128550 AACATTTGCCAAGAATGTTTCTATTAATCA 48128579 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915171747776