Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq23 125 3e-26
seq32 105 3e-20
seq1 96.9 1e-17
>seq23
Length=29576853
Score = 125 bits (138), Expect = 3e-26
Identities = 100/119 (84%), Gaps = 1/119 (1%)
Strand=Plus/Plus
Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625
|| ||||| |||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 550570 TTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGT 550629
Query 626 GGAGGCTCGCAGC-GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683
||||| || ||| ||| ||| ||||||||||| |||| | |||||||||||| ||
Sbjct 550630 GGAGGTCCGTAGCGGGTCCTGACGTGCAAATCGGTCGTTGGACCTGGGTATAGGGGTGA 550688
>seq32
Length=24824463
Score = 105 bits (116), Expect = 3e-20
Identities = 93/115 (81%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| | ||| |||||||||||||||||||| | ||||||||||||||| ||| ||||
Sbjct 14496872 TGTTAGAACCTGAAAGATGGTGAACTATGCCGGGC-AGGGTGAAGCCAGAGAAAATTCTG 14496930
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678
||||||| | || ||| ||| |||||||||| || || || ||||||||||
Sbjct 14496931 GTGGAGGTCTGTAGTGGTCCTGATGTGCAAATCGGTCATCTGATCTGGGTATAGG 14496985
>seq1
Length=79733107
Score = 96.9 bits (106), Expect = 1e-17
Identities = 91/116 (78%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| ||||| |||||||||||||||||||||| |||| |||||||| ||||||||||
Sbjct 593080 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGAGAAGCCAGGGGAAACTCTG 593021
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679
|||||| | || ||| ||| ||| |||| | | ||| | |||||| ||||
Sbjct 593020 GTGGAGATCCATAGTGGTCCTGATGTGGAAATTGGTTGTCTGACCTGGGTACAGGG 592965
Score = 95.1 bits (104), Expect = 5e-17
Identities = 113/151 (75%), Gaps = 7/151 (5%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| | ||| ||||||||||||| | || |||| |||||| | | ||||| |||||||
Sbjct 593978 GAGTCAAATTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 593919
Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158
| ||| ||||||||||| ||||||| || | | | ||||||| ||||||
Sbjct 593918 A----CCAGGAGACCGATAGTCAACAAGTATGGTAAGGGGCGGTTGAAAAGAACTTTG-- 593865
Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGA 189
||||||||| || || |||||| |||||
Sbjct 593864 AAGAGAGTTGAAGAGGGTGTGAAACCGTTGA 593834
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079933783850
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |