Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq23 125 3e-26 seq32 105 3e-20 seq1 96.9 1e-17 >seq23 Length=29576853 Score = 125 bits (138), Expect = 3e-26 Identities = 100/119 (84%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 566 TTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGT 625 || ||||| |||||||||||||||||||||| |||| ||||||||||||||||||||| Sbjct 550570 TTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGT 550629 Query 626 GGAGGCTCGCAGC-GGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| || ||| ||| ||| ||||||||||| |||| | |||||||||||| || Sbjct 550630 GGAGGTCCGTAGCGGGTCCTGACGTGCAAATCGGTCGTTGGACCTGGGTATAGGGGTGA 550688 >seq32 Length=24824463 Score = 105 bits (116), Expect = 3e-20 Identities = 93/115 (81%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| | ||| |||||||||||||||||||| | ||||||||||||||| ||| |||| Sbjct 14496872 TGTTAGAACCTGAAAGATGGTGAACTATGCCGGGC-AGGGTGAAGCCAGAGAAAATTCTG 14496930 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGG 678 ||||||| | || ||| ||| |||||||||| || || || |||||||||| Sbjct 14496931 GTGGAGGTCTGTAGTGGTCCTGATGTGCAAATCGGTCATCTGATCTGGGTATAGG 14496985 >seq1 Length=79733107 Score = 96.9 bits (106), Expect = 1e-17 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||| |||||||||||||||||||||| |||| |||||||| |||||||||| Sbjct 593080 TGTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGAGAAGCCAGGGGAAACTCTG 593021 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 |||||| | || ||| ||| ||| |||| | | ||| | |||||| |||| Sbjct 593020 GTGGAGATCCATAGTGGTCCTGATGTGGAAATTGGTTGTCTGACCTGGGTACAGGG 592965 Score = 95.1 bits (104), Expect = 5e-17 Identities = 113/151 (75%), Gaps = 7/151 (5%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| | ||| ||||||||||||| | || |||| |||||| | | ||||| ||||||| Sbjct 593978 GAGTCAAATTGCTTGGGAATGCAGCCCAAAGTGGGTGGTAAACTCCATCTAAGGCTAAAT 593919 Query 100 ATTGGCCA-GAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 | ||| ||||||||||| ||||||| || | | | ||||||| |||||| Sbjct 593918 A----CCAGGAGACCGATAGTCAACAAGTATGGTAAGGGGCGGTTGAAAAGAACTTTG-- 593865 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGA 189 ||||||||| || || |||||| ||||| Sbjct 593864 AAGAGAGTTGAAGAGGGTGTGAAACCGTTGA 593834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079933783850