Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq29 241 2e-61
seq1 221 2e-55
seq23 205 1e-50
seq33 134 2e-29
seq34 91.5 2e-16
seq78 89.7 8e-16
seq80 84.2 3e-14
>seq29
Length=26636480
Score = 241 bits (266), Expect = 2e-61
Identities = 207/251 (82%), Gaps = 9/251 (4%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 26503673 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 26503615
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
||| || | |||||| | ||| | |||||||||||||| | | || ||| |
Sbjct 26503614 CAATCT-CGGGTGGCTGAACGCCGCTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 26503556
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | ||| ||| |||||| | | |||||||||||||||||||||||||||||
Sbjct 26503555 CGGGGGTCGGGTAACTAGTTAGCACGCTTGAGTCTCGTTCGTTATCGGAATTAACCAGAC 26503496
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||||| ||||||||||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct 26503495 AAATCGCTCCACCAACTAAGAACCGCCATGCACCACCACCCACGGAATCCAGAAAGAGCT 26503436
Query 248 ATCAATCTGTC 258
|||||||||||
Sbjct 26503435 ATCAATCTGTC 26503425
>seq1
Length=79733107
Score = 221 bits (244), Expect = 2e-55
Identities = 202/250 (81%), Gaps = 9/250 (4%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||| |
Sbjct 596380 GTCAGTGTAGCCTGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 596438
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
|| || | |||||| | |||| | |||||||||||||| | | || ||| |
Sbjct 596439 CAGTCT-CGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 596497
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | |||||||||||||||||||||||||||||
Sbjct 596498 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 596557
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||||| ||||||||||||||||| |||||||||||||||||| ||||| ||||||||||
Sbjct 596558 AAATCGCTCCACCAACTAAGAACAGCCATGCACCACCACCCACAGAATAGAGAAAGAGCT 596617
Query 248 ATCAATCTGT 257
|||||| |||
Sbjct 596618 ATCAATATGT 596627
>seq23
Length=29576853
Score = 205 bits (226), Expect = 1e-50
Identities = 199/251 (79%), Gaps = 9/251 (4%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||||||||| || |||| |||| ||||||||||||||||||||||||||||||| |
Sbjct 546979 GTCAGTGTAGCTCGTGTGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTGC-T 546921
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130
||| || | |||||| | |||| | |||||||||||||| | | || ||| |
Sbjct 546920 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 546862
Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187
| | | | | ||| |||||| | | ||||| || ||||| ||||||||||||||
Sbjct 546861 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCCTTTGTTATGGGAATTAACCAGAC 546802
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
|||| |||||||||||||||| |||||| |||||||||||| ||||| ||||||||||
Sbjct 546801 AAATTGCTCCACCAACTAAGAATGGCCATACACCACCACCCACGGAATCGAGAAAGAGCT 546742
Query 248 ATCAATCTGTC 258
|||||||||||
Sbjct 546741 ATCAATCTGTC 546731
>seq33
Length=25004955
Score = 134 bits (148), Expect = 2e-29
Identities = 165/226 (73%), Gaps = 11/226 (5%)
Strand=Plus/Minus
Query 42 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATA 101
|||||||||||| ||||| |||||||||| || ||| | ||| || | ||| |
Sbjct 20333548 ACATCTAAGGGCCTCACACACCTGTTATTTGCTTAAATCTTGGGTGGTTGAACACCACTT 20333489
Query 102 GTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGG---------CTATTTAGCAG 152
||| |||||||||| | | | | ||| ||||| ||||||||||
Sbjct 20333488 GTCGCTCTAAGAAGTTGG--AGGATGCCCAGTGCTTGGGGTTTGTCTAACTATTTAGCAT 20333431
Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212
| | |||| | | |||||| ||||||||||||||||| ||| |||||| ||||| ||
Sbjct 20333430 GCCAGAGTCTTGCTTGTTATCAGAATTAACCAGACAAATGGCTCTACCAACAAAGAATGG 20333371
Query 213 CCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||| ||||||| | |||| ||||||||||||||| |||||
Sbjct 20333370 CCATGCACTACCACCCGTGGAATTGAGAAAGAGCTATCAACCTGTC 20333325
>seq34
Length=24171208
Score = 91.5 bits (100), Expect = 2e-16
Identities = 154/218 (71%), Gaps = 20/218 (9%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGC-GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73
||||| ||||| || ||| || | | |||||||| ||||||| ||||||||||||||
Sbjct 18054450 GTCAGAGTAGCATTGCATGCAGCTCTGGACATCTAAAGGCATCATAGACCTGTTATTGC- 18054392
Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133
|||| |||| | ||| | | | || ||||||||||| | | | | | |
Sbjct 18054391 TCAACCTTCGTT--GCT-----CAACTTGTTCCTCTAAGAAGTTGG--AGGATGCCGACT 18054341
Query 134 -CGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184
| ||||| ||| |||||| | | ||||| || |||||| ||||||||||
Sbjct 18054340 GCTCTGGGGTTGCGTAACTAGTTAGCATGCCAGAGTCTCATTAGTTATCAGAATTAACCA 18054281
Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222
|| |||| ||||||||||||||||| | |||||| ||
Sbjct 18054280 GAAAAATTGCTCCACCAACTAAGAACAGACATGCAACA 18054243
>seq78
Length=10575748
Score = 89.7 bits (98), Expect = 8e-16
Identities = 181/257 (70%), Gaps = 20/257 (8%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
|||| ||||||| | ||| |||| || | ||| |||||||| |||||||||||||| |
Sbjct 7875126 GTCACTGTAGCGAACATGCAGCCCCGACC-TCTGAGGGCATCGCAGACCTGTTATTGT-T 7875183
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA-GCCACCAACCATAGT 133
||| | | |||||| ||| | |||||||||| ||| | | | | ||
Sbjct 7875184 CAATCG-CAGGTGGCTGACCACCACT-GTCCCTCTAATAAGTTGTGGGATGCAGACT-GT 7875240
Query 134 CGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
| |||| ||| |||||| | | |||||||| |||| ||||||||||
Sbjct 7875241 CTGGGGGGTCACATAACTAGTTAGCATGCTGGAGTCTCGTT---TATCACAATTAACCAG 7875297
Query 186 ACAAA-TCACTCCACCAACTAAGAACGGCCATGCACCACCA-CCCATAGAATCAAGAAAG 243
||||| || |||||||||| || || ||||| | ||||| |||| |||| ||||||
Sbjct 7875298 ACAAAATCGCTCCACCAACCAAAAATGGCCACGGGCCACCCGCCCACGGAATTGAGAAAG 7875357
Query 244 AGCTATCAA-TCTGTCC 259
||||||||| ||||||
Sbjct 7875358 AGCTATCAACCCTGTCC 7875374
>seq80
Length=10054896
Score = 84.2 bits (92), Expect = 3e-14
Identities = 123/169 (73%), Gaps = 9/169 (5%)
Strand=Plus/Minus
Query 47 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCC 106
||||| ||||||| |||||||||||| ||| || | |||||| | || | |||||
Sbjct 3115332 TAAGGCCATCACAAACCTGTTATTGC-TCAGTCT-CTTGTGGCTGAATACCTCTTGTCCC 3115275
Query 107 TCTAAGAAGCCAGCCA--CCAACCA--TAGTCG---ATGGGGCTATTTAGCAGGTTAAGG 159
||||||||| | | ||||||| | | | ||| ||| |||||| | | |
Sbjct 3115274 TCTAAGAAGTTGGGGATGCCAACCACTTGGGGGGTCATGTAACTAGTTAGCATGCTGGAG 3115215
Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGA 208
|||| || |||||| ||||||||||||||||| ||||| |||| ||||
Sbjct 3115214 TCTCATTTGTTATCAGAATTAACCAGACAAATTGCTCCATCAACCAAGA 3115166
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796776171447
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |