Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq29 241 2e-61 seq1 221 2e-55 seq23 205 1e-50 seq33 134 2e-29 seq34 91.5 2e-16 seq78 89.7 8e-16 seq80 84.2 3e-14 >seq29 Length=26636480 Score = 241 bits (266), Expect = 2e-61 Identities = 207/251 (82%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 26503673 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 26503615 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | ||| | |||||||||||||| | | || ||| | Sbjct 26503614 CAATCT-CGGGTGGCTGAACGCCGCTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 26503556 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | ||| ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 26503555 CGGGGGTCGGGTAACTAGTTAGCACGCTTGAGTCTCGTTCGTTATCGGAATTAACCAGAC 26503496 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||||||| Sbjct 26503495 AAATCGCTCCACCAACTAAGAACCGCCATGCACCACCACCCACGGAATCCAGAAAGAGCT 26503436 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 26503435 ATCAATCTGTC 26503425 >seq1 Length=79733107 Score = 221 bits (244), Expect = 2e-55 Identities = 202/250 (81%), Gaps = 9/250 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| |||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 596380 GTCAGTGTAGCCTGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 596438 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 || || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 596439 CAGTCT-CGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 596497 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 596498 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 596557 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| ||||||||||||||||| |||||||||||||||||| ||||| |||||||||| Sbjct 596558 AAATCGCTCCACCAACTAAGAACAGCCATGCACCACCACCCACAGAATAGAGAAAGAGCT 596617 Query 248 ATCAATCTGT 257 |||||| ||| Sbjct 596618 ATCAATATGT 596627 >seq23 Length=29576853 Score = 205 bits (226), Expect = 1e-50 Identities = 199/251 (79%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| || |||| |||| ||||||||||||||||||||||||||||||| | Sbjct 546979 GTCAGTGTAGCTCGTGTGCAGCCCCAGACATCTAAGGGCATCACAGACCTGTTATTGC-T 546921 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 546920 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 546862 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||| || ||||| |||||||||||||| Sbjct 546861 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCCTTTGTTATGGGAATTAACCAGAC 546802 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||| |||||||||||||||| |||||| |||||||||||| ||||| |||||||||| Sbjct 546801 AAATTGCTCCACCAACTAAGAATGGCCATACACCACCACCCACGGAATCGAGAAAGAGCT 546742 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 546741 ATCAATCTGTC 546731 >seq33 Length=25004955 Score = 134 bits (148), Expect = 2e-29 Identities = 165/226 (73%), Gaps = 11/226 (5%) Strand=Plus/Minus Query 42 ACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATA 101 |||||||||||| ||||| |||||||||| || ||| | ||| || | ||| | Sbjct 20333548 ACATCTAAGGGCCTCACACACCTGTTATTTGCTTAAATCTTGGGTGGTTGAACACCACTT 20333489 Query 102 GTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGG---------CTATTTAGCAG 152 ||| |||||||||| | | | | ||| ||||| |||||||||| Sbjct 20333488 GTCGCTCTAAGAAGTTGG--AGGATGCCCAGTGCTTGGGGTTTGTCTAACTATTTAGCAT 20333431 Query 153 GTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGG 212 | | |||| | | |||||| ||||||||||||||||| ||| |||||| ||||| || Sbjct 20333430 GCCAGAGTCTTGCTTGTTATCAGAATTAACCAGACAAATGGCTCTACCAACAAAGAATGG 20333371 Query 213 CCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||| | |||| ||||||||||||||| ||||| Sbjct 20333370 CCATGCACTACCACCCGTGGAATTGAGAAAGAGCTATCAACCTGTC 20333325 >seq34 Length=24171208 Score = 91.5 bits (100), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 20/218 (9%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGC-GCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCC 73 ||||| ||||| || ||| || | | |||||||| ||||||| |||||||||||||| Sbjct 18054450 GTCAGAGTAGCATTGCATGCAGCTCTGGACATCTAAAGGCATCATAGACCTGTTATTGC- 18054392 Query 74 TCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGT 133 |||| |||| | ||| | | | || ||||||||||| | | | | | | Sbjct 18054391 TCAACCTTCGTT--GCT-----CAACTTGTTCCTCTAAGAAGTTGG--AGGATGCCGACT 18054341 Query 134 -CGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 | ||||| ||| |||||| | | ||||| || |||||| |||||||||| Sbjct 18054340 GCTCTGGGGTTGCGTAACTAGTTAGCATGCCAGAGTCTCATTAGTTATCAGAATTAACCA 18054281 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCACCA 222 || |||| ||||||||||||||||| | |||||| || Sbjct 18054280 GAAAAATTGCTCCACCAACTAAGAACAGACATGCAACA 18054243 >seq78 Length=10575748 Score = 89.7 bits (98), Expect = 8e-16 Identities = 181/257 (70%), Gaps = 20/257 (8%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||| ||||||| | ||| |||| || | ||| |||||||| |||||||||||||| | Sbjct 7875126 GTCACTGTAGCGAACATGCAGCCCCGACC-TCTGAGGGCATCGCAGACCTGTTATTGT-T 7875183 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA-GCCACCAACCATAGT 133 ||| | | |||||| ||| | |||||||||| ||| | | | | || Sbjct 7875184 CAATCG-CAGGTGGCTGACCACCACT-GTCCCTCTAATAAGTTGTGGGATGCAGACT-GT 7875240 Query 134 CGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 | |||| ||| |||||| | | |||||||| |||| |||||||||| Sbjct 7875241 CTGGGGGGTCACATAACTAGTTAGCATGCTGGAGTCTCGTT---TATCACAATTAACCAG 7875297 Query 186 ACAAA-TCACTCCACCAACTAAGAACGGCCATGCACCACCA-CCCATAGAATCAAGAAAG 243 ||||| || |||||||||| || || ||||| | ||||| |||| |||| |||||| Sbjct 7875298 ACAAAATCGCTCCACCAACCAAAAATGGCCACGGGCCACCCGCCCACGGAATTGAGAAAG 7875357 Query 244 AGCTATCAA-TCTGTCC 259 ||||||||| |||||| Sbjct 7875358 AGCTATCAACCCTGTCC 7875374 >seq80 Length=10054896 Score = 84.2 bits (92), Expect = 3e-14 Identities = 123/169 (73%), Gaps = 9/169 (5%) Strand=Plus/Minus Query 47 TAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCC 106 ||||| ||||||| |||||||||||| ||| || | |||||| | || | ||||| Sbjct 3115332 TAAGGCCATCACAAACCTGTTATTGC-TCAGTCT-CTTGTGGCTGAATACCTCTTGTCCC 3115275 Query 107 TCTAAGAAGCCAGCCA--CCAACCA--TAGTCG---ATGGGGCTATTTAGCAGGTTAAGG 159 ||||||||| | | ||||||| | | | ||| ||| |||||| | | | Sbjct 3115274 TCTAAGAAGTTGGGGATGCCAACCACTTGGGGGGTCATGTAACTAGTTAGCATGCTGGAG 3115215 Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGA 208 |||| || |||||| ||||||||||||||||| ||||| |||| |||| Sbjct 3115214 TCTCATTTGTTATCAGAATTAACCAGACAAATTGCTCCATCAACCAAGA 3115166 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796776171447