Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq23 87.8 2e-15 seq29 86.0 6e-15 seq1 86.0 6e-15 >seq23 Length=29576853 Score = 87.8 bits (96), Expect = 2e-15 Identities = 127/176 (72%), Gaps = 5/176 (3%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCC---TTTGCTCGAATACATTACCAT 69 |||||||||||||| |||||| ||||||||||||| || | |||| | | Sbjct 546245 TTTACTTTGAAAAACTTAGAGTTTTCAAAGCAGGCCGGAGCCGCCTGGATACCGCAGCTA 546304 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||||||| ||||| || ||||| |||||||||| ||||| | ||| | | |||| Sbjct 546305 GGAATAATGGAATACGA-TTGCGGGTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 546362 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| || |||||| | ||||| || | |||||||||||||||| Sbjct 546363 TTAAGAGGGACAGCCGGGGGCATTTGTATTGCGCTGCTAGAGGTGAAATTCTTGGA 546418 >seq29 Length=26636480 Score = 86.0 bits (94), Expect = 6e-15 Identities = 127/176 (72%), Gaps = 7/176 (4%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCT---TTGCTCGAATACATTACCAT 69 ||||||||||||||||| || ||||||||||||||| || | |||| | | Sbjct 26502936 TTTACTTTGAAAAAATT--AGTGTTCAAAGCAGGCCTGAGCCGCCTGGATACTACAGCTA 26502993 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 |||| ||| ||||||||||| ||||||||||||| ||||| | ||| | | |||| Sbjct 26502994 GGAACAATGGAATAGGACGT-TGGTTCTATTTTGTTGGTTT-TCGGAACTGAGGCCATGA 26503051 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 26503052 TTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 26503107 >seq1 Length=79733107 Score = 86.0 bits (94), Expect = 6e-15 Identities = 129/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTA-GAGCGTTCAAAGCAGGCCTTTGCTC---GAATACATTACCA 68 |||||||||||||||||| ||| ||||||||||| || || | |||| | | Sbjct 597173 TTTACTTTGAAAAAATTAAGAGTGTTCAAAGCAGACCCCAGCCACCTGGATACTGCAGCT 597114 Query 69 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATG 128 |||||||| |||||||| | ||||||||||||| ||||| | ||| | | ||| Sbjct 597113 AGGAATAATGGAATAGGA-GCCCGGTTCTATTTTGCTGGTTT-TCGGAACTGAGGCCATG 597056 Query 129 ATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATT 187 || || | ||| || |||||| | ||||| | | |||||||||||||||||| Sbjct 597055 ATTAAGAGGGACAGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGATT 596997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511984688480