Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq29 194 3e-47 seq1 152 1e-34 seq23 143 5e-32 seq8 75.2 2e-11 >seq29 Length=26636480 Score = 194 bits (214), Expect = 3e-47 Identities = 200/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | |||| | |||| || | ||||| |||||||||||||||| Sbjct 26503575 CTTCTTAGAGGGACAAGCGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 26503632 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 26503633 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 26503692 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | | ||| ||||||| | | |||| Sbjct 26503693 CCTACGCCGGCAGGCACGGGTAACCCGTTGAACCCCATTTGTGATGGGGATCGGGAATTG 26503752 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | ||| |||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 26503753 CAATTATTCCCCATGAACCAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 26503812 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 26503813 AAGTCCCTGCCCTTTGTA 26503830 >seq1 Length=79733107 Score = 152 bits (168), Expect = 1e-34 Identities = 191/258 (74%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | |||| |||||||||||||||| Sbjct 596478 CTTCTTAGAGGGACAAGTGGCATTCAGCCACCCGA-GACTGAG-CAATAACAGGTCTGTG 596421 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| |||||| ||||||||||| | || || || | | Sbjct 596420 ATGCCCTTAGATGTCCGGGGCTGCACGCAGGCTACACTGACTGGCTCAGCGTGTGCCTAC 596361 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| | || ||| || ||| | | || | | | ||| ||||||| | |||| Sbjct 596360 CCTATGGTGGCAGGCGCGGATAACCCGTTGAAGCCCATTTGTGATGGGGATCAGGGATTG 596301 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | ||| |||||| || |||||| ||| |||| ||| ||||||||| Sbjct 596300 CAATTATTCCCCATGAACAAGGAATCCCCAGTAAGTGCGGATCATAAGCTTGCGTTGATT 596241 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 596240 AAGTCCCTGCCCTTTGTA 596223 >seq23 Length=29576853 Score = 143 bits (158), Expect = 5e-32 Identities = 191/259 (74%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 546881 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 546938 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| |||| |||| || ||||||||||| | || | || | | Sbjct 546939 ATGCCCTTAGATGTCTGGGGCTGCACACGAGCTACACTGACTGGCTCAGTGTGTGCCTAC 546998 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT-CTGTCGTGCTGGGGATAGAGCATT 249 ||| |||| ||| ||||| | ||| |||| | || || |||||| | | ||| Sbjct 546999 CCTACTCCGGCAGGCACAGGTAA-CCCGTTGAACTCCATTCCTGATGGGGAAGGGGGATT 547057 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | || ||||||| || |||||| || |||| ||| || ||||| Sbjct 547058 GCAATTATTCCCCACGAAGGAGGAATTCCCAGTAAGTGCTGGTCACAAGCTTGCCTTGAT 547117 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 547118 TAAGTCCCTGCCCTTTGTA 547136 >seq8 Length=46046909 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | |||||||||||| | | | |||||||| | | ||||| || Sbjct 553453 TCGTGATGGGGATCACGGATTGCAATTATTCCCCATAAACGAGGAGTTCTCGGTAAGTGC 553512 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCC-TGCCCTTTGTA 328 ||||| ||| || ||||||| ||||| ||||||||||| Sbjct 553513 AGGTCATAAGCTTGCATTGATTAAGTCCCTTGCCCTTTGTA 553553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947170759936