Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012- 07-31] 3,087 sequences; 2,464,367,180 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq23 425 2e-116 seq1 392 1e-106 seq55 293 8e-77 seq17 273 7e-71 seq21 196 2e-47 seq57 168 2e-39 seq41 91.5 5e-16 seq5 82.4 2e-13 seq45 80.6 9e-13 seq7 80.6 9e-13 >seq23 Length=29576853 Score = 425 bits (470), Expect = 2e-116 Identities = 275/301 (91%), Gaps = 4/301 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||||||||||||||| ||| ||||| | | |||||||||| ||||||| Sbjct 552677 CTCCCACTTATTCTACACCTCTCCTGTCTCTTCACTGTGCCAGACTAGAGTCTAGCTCAA 552618 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTC----CCTTGGCTGTGGTTTCG 352 ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 552617 CAGGGTCGTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCGTTCCCTTGGCTGTGGTTTGG 552558 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTA 412 || |||||||| ||||||||| |||||||||||| ||||||||||||| ||||||||||| Sbjct 552557 CTGGATAGTAGGTAGGGACAGCGGGAATCTCGTTCATCCATTCATGCGTGTCACTAATTA 552498 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 552497 GATGACGAGGAATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 552438 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAAC 532 || ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| Sbjct 552437 TTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATGGAGTCAAC 552378 Query 533 A 533 | Sbjct 552377 A 552377 Score = 100 bits (110), Expect = 9e-19 Identities = 87/107 (81%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 552967 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 552908 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| |||||||| |||||||||| || | || |||| Sbjct 552907 GTTTGACAGGTGTACCGCCCCACTCAAACTCCCC-CCCGGCACTGTC 552862 >seq1 Length=79733107 Score = 392 bits (434), Expect = 1e-106 Identities = 444/604 (74%), Gaps = 87/604 (14%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||| | ||| Sbjct 590664 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTTCATTACT 590723 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| || |||||| ||||||||||||||| || |||| | | | | || Sbjct 590724 GTTTGACAGGTGTACCACCCCAGTCAAACTCCCCACCTGGCACTGTCGCCTAAGCAGGTC 590783 Query 127 GGCCCGCGAAGGACCTTAACGCCAGAA--AATGG----TCGGTGA--------AGACCAG 172 | |||| | || | ||||| || | |||| | || ||| Sbjct 590784 G---CGCGGCCGGCC-----GGCAGAAGCAAGAGCCCCTCGGGGCTCGCCCCCAG-CCAC 590834 Query 173 TTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGA- 231 | ||| ||| || | ||| || ||||||| || ||||||||||||||| |||| | Sbjct 590835 TCGCGCCTCACTGGGTCAGTGAATAAACGATCAGAGTAGTGGTATTTCACCGGCGCTGGC 590894 Query 232 --------------------------------------AACGG----CTCCCACTTATTC 249 | ||| ||||||||||||| Sbjct 590895 GGACCCTGTCCAGGCCCTTCGCGGGGGTGGGGGGTGGCACCGGGGGCCTCCCACTTATTC 590954 Query 250 TACACCTCTCAAGTC----AT-----TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGG 300 ||||||||| | ||| || ||||| | | |||||||||||||||||||||| Sbjct 590955 TACACCTCTTATGTCTCTCATGTCTCTTCACCT-GCCAGACTAGAGTCAAGCTCAACAGG 591013 Query 301 GTCTTCTTTCC-----------CCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 349 |||||||| || |||||||||||||||||||||||||||||||||||||| Sbjct 591014 GTCTTCTTCCCGCCCCCCCCCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTT 591073 Query 350 TCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 ||||| |||||||| |||||||||||||||||||||| |||||||||||| | |||||| Sbjct 591074 TCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCCTGGCACTAA 591133 Query 410 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCG 469 |||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| Sbjct 591134 TTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTTCTCCTGCCGTTTACCCG 591193 Query 470 CGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTC 529 |||| ||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 591194 TGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCATC 591253 Query 530 AACA 533 |||| Sbjct 591254 AACA 591257 >seq55 Length=16538760 Score = 293 bits (324), Expect = 8e-77 Identities = 244/295 (83%), Gaps = 5/295 (2%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||| || ||| |||| |||| ||||| | | ||||| |||||||||| | Sbjct 9541908 CTCCCACTT-TTATAC---TCTCGAGTCTCTTCACTGTGCCAGACTACAGTCAAGCTCTA 9541853 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || ||||| |||||||| |||||||| ||||||| |||||||||||| | |||| ||| | Sbjct 9541852 CAAGGTCTCCTTTCCCCACTGATTCCACCAAGCCTGTTCCCTTGGCTATAGTTTTGCTGG 9541793 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||| | || ||||| | ||| |||||||||| |||||||||||||| Sbjct 9541792 ATAGTAGGTAGGAATAGCAGGAATTTATTTA-TCCATTCATGTCTATCACTAATTAGATG 9541734 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||||||||||||||||||| ||||||||||||||| || |||||| | |||| Sbjct 9541733 ATAAGGCATTTGGCTACCTTAAGACGGTCATAGTTACTCCCACCATTTACCTGTGCTTCA 9541674 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||| Sbjct 9541673 TTGAATTTCTTCACTTTGACATTTAGAGCACTAGGCAGAAATCATATTGCATCAA 9541619 >seq17 Length=33267342 Score = 273 bits (302), Expect = 7e-71 Identities = 180/199 (90%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 ||||||||||||||||||| || | |||||| |||||| ||||||||||||||| ||||| Sbjct 7589485 TTCCCTTGGCTGTGGTTTCACTGGGTAGTAGGTAGGGAAAGTGGGAATCTCGTTCATCCA 7589426 Query 393 TTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTA 452 ||||||| | |||| |||||||||| || ||||||||||||||||||||||||||||||| Sbjct 7589425 TTCATGCACATCACGAATTAGATGATGAAGCATTTGGCTACCTTAAGAGAGTCATAGTTA 7589366 Query 453 CTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGC 512 |||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||| ||| Sbjct 7589365 CTCCGGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACGTTCAGGGCACTTGGC 7589306 Query 513 AGAAATCACATTGCGTCAA 531 ||||||||| | ||||||| Sbjct 7589305 AGAAATCACGTCGCGTCAA 7589287 >seq21 Length=31534637 Score = 196 bits (216), Expect = 2e-47 Identities = 229/303 (76%), Gaps = 5/303 (2%) Strand=Plus/Minus Query 219 TCACTTGCGCCGAAACGGCTCCC-ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC 277 || || || || | | |||| || ||||| ||| |||| | | | ||||| | | | Sbjct 19592156 TCCCTGGCCCCAACAGGGCTTCCTACTTAACCTATACCTTCTATGCCTCTTCACCATGCC 19592097 Query 278 -GGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCC 336 || || | ||||| ||||||| | |||||| ||| |||| |||||||| |||| Sbjct 19592096 AGGTTTACAATCAAGTTCAACAGAGCCTTCTTGGCCCATAGATTTTGCCAAGCCATTTCC 19592037 Query 337 CTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCA 396 |||||||||||||| | ||| || | |||||| ||||| || || |||| |||| Sbjct 19592036 -TTGGCTGTGGTTTCATCAAATAACAGGCAAAGACAGTAGGAATATCATTCATCC-TTCA 19591979 Query 397 TGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 ||| ||| ||||||||||| ||||||||| ||| ||||||||||||||||||||| || Sbjct 19591978 TGCATGTCCCTAATTAGATGGTGAGGCATTTAGCTCCCTTAAGAGAGTCATAGTTACACC 19591919 Query 457 C-GCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGA 515 | | |||||| | |||| | ||||| |||||||||||||||||||||||||||| | Sbjct 19591918 CATCAATTTACCTGGGCTTCAATAAATTTATTCACTTTGACATTCAGAGCACTGGGCAAA 19591859 Query 516 AAT 518 ||| Sbjct 19591858 AAT 19591856 >seq57 Length=16393941 Score = 168 bits (186), Expect = 2e-39 Identities = 221/299 (74%), Gaps = 29/299 (10%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| || |||||| |||| ||||| ||| ||||| | | ||||||||||| |||||| Sbjct 15107415 CTCTCAGTTATTCAACACTTCTCA-GTCTCTTCACTGTGCCAGACTAGAGTCATGCTCAA 15107473 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT--CCCTTGGCTGTGGTTTCGCT 354 ||| ||||| | | |||||| | | |||| | || ||||| |||||||||| ||| Sbjct 15107474 CAGAGTCTTTGT---CAGCTGATCTCTC-AAGCTCATTGCCCCTTAGCTGTGGTTTTGCT 15107529 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT--A 412 || || |||| |||||| ||| |||| ||| |||| |||||| | Sbjct 15107530 AG------------GATAGTGAGAATCTTGTT----CATTTGTGCACGTCTCTAATTTTA 15107573 Query 413 GATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGC 472 ||||| |||||||||| ||||||||||||| | |||||| || || ||||||| || | Sbjct 15107574 GATGATGAGGCATTTGTCTACCTTAAGAGAAT--TAGTTAGTCTGGC-GTTTACCTGC-C 15107629 Query 473 TTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 || |||| ||| | |||| ||||||| | |||||||| |||||||||||| | |||| Sbjct 15107630 TTCATTGAGTTTTTCCACTCTGACATTGAAAGCACTGGACAGAAATCACATCACATCAA 15107688 >seq41 Length=20795463 Score = 91.5 bits (100), Expect = 5e-16 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| ||| | ||||||||||| | ||||| Sbjct 3271496 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCCGAGCTCGCCTTAGGACACTTTCGTTACA 3271555 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCT 104 |||| |||| ||| ||||||||| || ||||||||||| Sbjct 3271556 GTTTGACAGGTGTACCGCCCCAGTCAGACTCCCCACCT 3271593 Score = 91.5 bits (100), Expect = 5e-16 Identities = 85/107 (79%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| |||| | |||| |||| | ||||||||||||||| ||| Sbjct 4590483 CTTCTGCTCCACGGGAGGGTTCTCTCCTCC-TGAGCTCACCTTAGGACACCTGCATTACT 4590425 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| ||||||| ||||||||| |||||||||| ||| || |||| Sbjct 4590424 GTTTGGCAGATGTACCGCCCCAGTCAAACTCCCCGTCTGGCACTGTC 4590378 >seq5 Length=63188916 Score = 82.4 bits (90), Expect = 2e-13 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 ||||||||||||||||||||||||| ||||||||||| |||||||||| |||| Sbjct 48615100 GAATTTCTTCACTTTGACATTCAGAACACTGGGCAGAGATCACATTGCATCAA 48615048 >seq45 Length=19690559 Score = 80.6 bits (88), Expect = 9e-13 Identities = 79/102 (77%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 293 TCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCG 352 ||||| |||||||| || ||| | |||| | |||||||||||| | ||||| Sbjct 12615184 TCAACTGGGTCTTCCTTAAA----GATCTCACCAAACATGTTCCCTTGGCTATAGTTTCC 12615129 Query 353 CTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATT 394 || |||||||| | ||||||||||||||||| || ||||||| Sbjct 12615128 CTGGATAGTAGGTGGGGACAGTGGGAATCTCATTTATCCATT 12615087 >seq7 Length=57674156 Score = 80.6 bits (88), Expect = 9e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 462 TTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 ||| | ||| ||| ||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 6318874 TTTGCTCGCACTTCACTGAATTTCTGCACTTTGACATTAAGAGCACTGGGCAGAAATCAC 6318815 Query 522 ATTGCGTCAACA 533 || ||||||| Sbjct 6318814 ATCATGTCAACA 6318803 Score = 78.8 bits (86), Expect = 3e-12 Identities = 67/83 (81%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||||||| ||||||| |||| |||| | |||||||||||| |||||| Sbjct 27821357 CTTCTGCTCCACAGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCAGCGTTACC 27821416 Query 67 GTTTAACAGATGTGCCGCCCCAG 89 ||| |||| ||| | ||||||| Sbjct 27821417 ATTTGACAGGTGTACTGCCCCAG 27821439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635149521376