Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Ceratotherium_20simum_20simum_20[refseq_20GCF_5F000283155.1_202012-
07-31] 3,087 sequences; 2,464,367,180 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq48 116 3e-21
seq35 98.7 8e-16
seq60 86.0 5e-12
>seq48
Length=18573065
Score = 116 bits (128), Expect = 3e-21
Identities = 112/144 (78%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
|||||| || || ||||| |||||||| || ||||| || || |||| ||||| ||
Sbjct 2894080 GGTATATTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 2894139
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| ||||| || | ||| ||||| | ||||||||||||||| ||||| ||
Sbjct 2894140 GTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGAGTGCCTGTCTCTGTCTG 2894199
Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192
|||||||||||||| | ||||||
Sbjct 2894200 AGACTCAATGATGGCATACCAAAG 2894223
>seq35
Length=24201928
Score = 98.7 bits (108), Expect = 8e-16
Identities = 86/107 (80%), Gaps = 0/107 (0%)
Strand=Plus/Minus
Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329
||||||||||| || | ||||| || |||||||| ||||| || ||| ||| ||||||
Sbjct 13546605 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAATTCTCATCGAGAAT 13546546
Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376
|| ||||| |||||||||||| | || || || || |||||||| ||
Sbjct 13546545 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 13546499
>seq60
Length=14545593
Score = 86.0 bits (94), Expect = 5e-12
Identities = 88/115 (77%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||||||||| || || || || || | ||||| || |||||||| |||||||| |
Sbjct 8426960 TGGAACGTTTTAGCCAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAA 8427019
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370
|||||||||| || | ||||| || ||||| ||| | ||||| || || |||||
Sbjct 8427020 TTGCCATGGAAAACATACACTCTGAAATGTATAGTCTCCTCATTGACACTTACAT 8427074
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397553042373680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |