Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq10900 288 1e-75 seq2702 246 5e-63 seq10354 118 2e-24 seq34 100 4e-19 seq11 96.9 5e-18 >seq10900 Length=1044 Score = 288 bits (318), Expect = 1e-75 Identities = 204/229 (89%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||||||| |||| ||||||| |||||||||||||||| | Sbjct 246 GTACAAAGGGCAGGGACGTAATCAACGCAAGCT-GATGACTTGCGCTTACTAGGAATT-C 189 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCA-AAGATT 119 ||||||||||| ||| |||| ||||| |||||||||| ||||| | | ||||| |||||| Sbjct 188 CTCGTTGAAGAGCAATAATTACAATGCTCTATCCCCAGCACGACGGAGTTTCACAAGATT 129 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| ||||| ||||||||||| |||||||| || | | ||||||||||||||||||| Sbjct 128 ACCAAGACCTCTCGGCCAAGGT--TAGACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCG 71 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 70 GCCCAGAACGTCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 22 >seq2702 Length=10521 Score = 246 bits (272), Expect = 5e-63 Identities = 196/231 (85%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| || | | |||| ||||||| |||| ||||||| ||| | Sbjct 10353 GTACAAAGGGCAGGGACGTAATCTGCACAAGCT-GATGACTTGCGCATACTAGGCATT-C 10296 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||| | || || ||||||||| ||| ||||||||||||||| | |||||||| Sbjct 10295 CTCGTTCACGATTAATAATTGCAATAATCGATCCCCATCACGATGCGTACT-AAAGATTA 10237 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| ||| |||||||||| ||| ||||| |||| |||||||||||||||||||| | Sbjct 10236 CCCGGGCCTCTCGGCCAAGG--ATAAACTCGATGAACGCATCAGTGTAGCGCGCGTGCAG 10179 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||| ||||||||||||||||||||||||||||||||| |||||||| || Sbjct 10178 CCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTTAAACTTCCTTG 10128 >seq10354 Length=1096 Score = 118 bits (130), Expect = 2e-24 Identities = 67/68 (99%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 5 TCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGACCTGTTATTGCCTC 64 Query 221 AAACTTCC 228 |||||||| Sbjct 65 AAACTTCC 72 >seq34 Length=181543317 Score = 100 bits (110), Expect = 4e-19 Identities = 106/136 (78%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||| ||| Sbjct 150410984 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAA-TTC 150410927 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | |||||||||||| ||| || | | || Sbjct 150410926 CTCGTTCACGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAATGGGTT 150410867 Query 120 ACCCGGACCTGTCGGC 135 ||||| |||| |||| Sbjct 150410866 ACCCGTGCCTGACGGC 150410851 >seq11 Length=140388259 Score = 96.9 bits (106), Expect = 5e-18 Identities = 131/179 (73%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||||| ||||| | ||| || |||||| |||| ||| Sbjct 15574263 GTACAAAGGGCAGGGACTTAATCAACGTAAGCTT-ACGACCTGCACTTACTGGGAA-TTC 15574206 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | |||||||||||| ||| || | | || Sbjct 15574205 CTCGTTCATGGGGAATAATTGCAATCCCCAATCCCCATCACGAATGGGGTTCAACGGGTT 15574146 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||| |||| |||| ||| | || || ||| ||||||||||||| |||| Sbjct 15574145 ACCCGCGCCTGCCGGCACAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGTGTGC 15574087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751916375485