Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq10354 369 7e-100 seq2702 266 6e-69 >seq10354 Length=1096 Score = 369 bits (408), Expect = 7e-100 Identities = 264/299 (88%), Gaps = 6/299 (2%) Strand=Plus/Minus Query 15 GGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTT 74 |||||||||||||||| | || | |||| ||| | | || || ||||||||| Sbjct 792 GGGCCTTTCCTTCTGGCTAACCTTGAGTCCTTG--TGGCTCTT--GGCGAACCAGGACTT 737 Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTCGAATACATTAGCATGGA 133 |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| Sbjct 736 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGTATTGCTCGAATATATTAGCATGGA 677 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 676 ATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCTAGGACCATCGTAATGATTAA 617 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 616 TAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 557 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||||||||||||||||||| || ||||||| |||||||||||||| |||||||||| Sbjct 556 AGACTAACTACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCA-AGAACGAAAGT 499 >seq2702 Length=10521 Score = 266 bits (294), Expect = 6e-69 Identities = 211/247 (85%), Gaps = 5/247 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC-TCGAATACATTAGCATGG 132 |||||||||| |||||||||||| ||||||||||| ||||| | ||||| ||||||||| Sbjct 9456 TTTACTTTGAGAAAATTAGAGTGCTCAAAGCAGGCTTTTGCCTTGAATAGTTTAGCATGG 9515 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG-ACCGCCGTAATGATT 191 ||||||| | |||||| | ||||||||||||||||||| |||| ||| |||||| || Sbjct 9516 AATAATAAAGTAGGACTTT-GGTTCTATTTTGTTGGTTT-TAGGTACCAAAGTAATGGTT 9573 Query 192 AATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATT 251 |||||| | ||| ||||| | ||||| || ||||||||||||||||||| ||||| || Sbjct 9574 AATAGGAACAGTTGGGGGCATTCGTATTTAACTGTCAGAGGTGAAATTCTTAGATTTGTT 9633 Query 252 GAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAG 311 ||||| ||||||||||||||| || |||||||||||||||||||||| ||||||||| Sbjct 9634 AAAGACGAACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAAG 9692 Query 312 TTAGGGG 318 ||||||| Sbjct 9693 TTAGGGG 9699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915094944192