Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= AAMG01000304.1
Length=683
Score E
Sequences producing significant alignments: (Bits) Value
seq7 127 9e-27
seq15 125 3e-26
seq5 116 2e-23
seq12 93.3 2e-16
>seq7
Length=66841537
Score = 127 bits (140), Expect = 9e-27
Identities = 110/135 (81%), Gaps = 1/135 (1%)
Strand=Plus/Plus
Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608
||| | ||||| | || | ||||||| |||||| ||||||||||| |||| |||
Sbjct 45687038 GAGCATGAGCACACGTGATCGGACCCGGAAGATGATGAACTATGCCAAGGCAGGGCAAAG 45687097
Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668
|||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| ||
Sbjct 45687098 CCAGAGGAAACTCTGGTGGAGG-TCCTAGCGGTCCTGACGTGCAAATCGGTCGTCCAACC 45687156
Query 669 TGGGTATAGGGGCGA 683
|||||||||||||||
Sbjct 45687157 TGGGTATAGGGGCGA 45687171
Score = 114 bits (126), Expect = 5e-23
Identities = 93/113 (82%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628
|||||||||||||||||||||||| ||| | |||| ||||||||||||||||||| ||||
Sbjct 40395660 GGACCCGAAAGATGGTGAACTATGACTGGACAGGGCGAAGCCAGAGGAAACTCTGCTGGA 40395719
Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681
|| || ||| | ||| ||| |||||| || || || ||| |||||||||
Sbjct 40395720 GGTCCGTAGCAGCACTGATGTGTAAATCGGTCATCTAACCTGGCTATAGGGGC 40395772
>seq15
Length=125274996
Score = 125 bits (138), Expect = 3e-26
Identities = 105/129 (81%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614
||||| | |||| ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 38136611 GAGCACACATGTTAGGACCAGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 38136670
Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674
|||||||||||||| | | || ||| ||| | |||||||| | || | ||||||
Sbjct 38136671 GAAACTCTGGTGGAAGTCTGTAGTGGTCCTGACATGCAAATCAGTGTTCTGACCTGGGTA 38136730
Query 675 TAGGGGCGA 683
|| ||| ||
Sbjct 38136731 TAAGGGGGA 38136739
>seq5
Length=178027732
Score = 116 bits (128), Expect = 2e-23
Identities = 96/117 (82%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623
|||| |||||| ||| ||||||| ||||||||| ||| |||||||||||||||||
Sbjct 133573032 TGTTAGGACCCAAAACATGGTGAGCTATGCCTGGGCGGGGCGAAGCCAGAGGAAACTCCA 133572973
Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680
|||||||| || |||||| |||| |||||||||| ||||| | |||||||| |||
Sbjct 133572972 GTGGAGGCCCGTAGCGGTCCTGGTGTGCAAATCGGTCGTCCGACCTGGGTATATGGG 133572916
>seq12
Length=127780087
Score = 93.3 bits (102), Expect = 2e-16
Identities = 116/159 (73%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99
||||| ||| || |||||||||| | || |||| |||||| | | |||| |||||||
Sbjct 56289780 GAGTCTGATTGCTTTGGAATGCAGCCCAAAGTGGGTGGTAAACTCCAGCTAAGGCTAAAT 56289721
Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159
| || ||| | |||| |||||| || | ||||| ||||||| |||||||||
Sbjct 56289720 ACCTGCACAAGATCAATAGTCACCAAGTACTGTAAGGGAAAGTTGAAAAGAACTTTGGAA 56289661
Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198
|||||||| || || ||||||| || | ||| ||||
Sbjct 56289660 AGAGAGTTTAAGAGGGCGTGAAACCATTAAGAGGTAAGC 56289622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 2079753775450
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |