Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq7 127 9e-27 seq15 125 3e-26 seq5 116 2e-23 seq12 93.3 2e-16 >seq7 Length=66841537 Score = 127 bits (140), Expect = 9e-27 Identities = 110/135 (81%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | ||||| | || | ||||||| |||||| ||||||||||| |||| ||| Sbjct 45687038 GAGCATGAGCACACGTGATCGGACCCGGAAGATGATGAACTATGCCAAGGCAGGGCAAAG 45687097 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| || |||||| ||| ||||||||||| ||||| || Sbjct 45687098 CCAGAGGAAACTCTGGTGGAGG-TCCTAGCGGTCCTGACGTGCAAATCGGTCGTCCAACC 45687156 Query 669 TGGGTATAGGGGCGA 683 ||||||||||||||| Sbjct 45687157 TGGGTATAGGGGCGA 45687171 Score = 114 bits (126), Expect = 5e-23 Identities = 93/113 (82%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||| ||| | |||| ||||||||||||||||||| |||| Sbjct 40395660 GGACCCGAAAGATGGTGAACTATGACTGGACAGGGCGAAGCCAGAGGAAACTCTGCTGGA 40395719 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 || || ||| | ||| ||| |||||| || || || ||| ||||||||| Sbjct 40395720 GGTCCGTAGCAGCACTGATGTGTAAATCGGTCATCTAACCTGGCTATAGGGGC 40395772 >seq15 Length=125274996 Score = 125 bits (138), Expect = 3e-26 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 38136611 GAGCACACATGTTAGGACCAGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 38136670 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||||| | | || ||| ||| | |||||||| | || | |||||| Sbjct 38136671 GAAACTCTGGTGGAAGTCTGTAGTGGTCCTGACATGCAAATCAGTGTTCTGACCTGGGTA 38136730 Query 675 TAGGGGCGA 683 || ||| || Sbjct 38136731 TAAGGGGGA 38136739 >seq5 Length=178027732 Score = 116 bits (128), Expect = 2e-23 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| |||||| ||| ||||||| ||||||||| ||| ||||||||||||||||| Sbjct 133573032 TGTTAGGACCCAAAACATGGTGAGCTATGCCTGGGCGGGGCGAAGCCAGAGGAAACTCCA 133572973 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 |||||||| || |||||| |||| |||||||||| ||||| | |||||||| ||| Sbjct 133572972 GTGGAGGCCCGTAGCGGTCCTGGTGTGCAAATCGGTCGTCCGACCTGGGTATATGGG 133572916 >seq12 Length=127780087 Score = 93.3 bits (102), Expect = 2e-16 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 ||||| ||| || |||||||||| | || |||| |||||| | | |||| ||||||| Sbjct 56289780 GAGTCTGATTGCTTTGGAATGCAGCCCAAAGTGGGTGGTAAACTCCAGCTAAGGCTAAAT 56289721 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | || ||| | |||| |||||| || | ||||| ||||||| ||||||||| Sbjct 56289720 ACCTGCACAAGATCAATAGTCACCAAGTACTGTAAGGGAAAGTTGAAAAGAACTTTGGAA 56289661 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 |||||||| || || ||||||| || | ||| |||| Sbjct 56289660 AGAGAGTTTAAGAGGGCGTGAAACCATTAAGAGGTAAGC 56289622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079753775450