Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq10354 313 4e-83 seq2702 275 1e-71 seq10900 159 6e-37 seq11 131 3e-28 seq33 120 5e-25 seq9 104 4e-20 seq20 96.9 6e-18 seq21 95.1 2e-17 seq6 91.5 2e-16 seq1 91.5 2e-16 seq2 77.0 5e-12 seq14 75.2 2e-11 >seq10354 Length=1096 Score = 313 bits (346), Expect = 4e-83 Identities = 221/250 (88%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGACCTGTTATTG 60 Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---AGCCACCAACC 128 |||||||||||||| |||| ||| || ||||||||||||||||| | ||| ||| Sbjct 61 CCTCAAACTTCCATCGGCTTGAAACCGATAGTCCCTCTAAGAAGTGGATAACCAGCAA-- 118 Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | | |||||||| |||||||||||||||||||||||| |||||| |||||| Sbjct 119 ATGCTAGCACCA-CTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAATTAAGCAGACA 177 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| Sbjct 178 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAAAGAGCTC 237 Query 249 TCAATCTGTC 258 |||||||||| Sbjct 238 TCAATCTGTC 247 >seq2702 Length=10521 Score = 275 bits (304), Expect = 1e-71 Identities = 213/253 (84%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| Sbjct 10198 TCAGTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTT 10139 Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCCAGC------CACCAAC 127 |||||||| | | | | | | | |||||||||||||||| | | || ||| Sbjct 10138 AAACTTCCTTGCGATTTATAACCGCAAAGTCCCTCTAAGAAGCGATCACGGGACAGCAAA 10079 Query 128 --CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185 | || || |||||||||||||||||||||||||||||| ||||||||||||| Sbjct 10078 AGCTTATTCCCGTACCCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAG 10019 Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 10018 ACAAATCRCTCCACCAACTAAGAACGGCCATGCACCACCACCCAAAGAATCAAGAAAGAG 9959 Query 246 CTATCAATCTGTC 258 || |||||||||| Sbjct 9958 CTWTCAATCTGTC 9946 >seq10900 Length=1044 Score = 159 bits (176), Expect = 6e-37 Identities = 97/103 (94%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 103 ACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 44 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTC 104 |||||||||||||||||||||||| |||| ||| || |||||| Sbjct 43 CCTGTTATTGCCTCAAACTTCCATCGGCTTGAAACCGATAGTC 1 >seq11 Length=140388259 Score = 131 bits (144), Expect = 3e-28 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | || || ||| ||||| |||||||| |||||||||||| |||| Sbjct 11309525 CTAGTTAGCATGCCAGAGTGTCCTTCATTATCAGAATTAACTAGACAAATCACTTTACCA 11309584 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| |||||||||| ||||||||||| |||||| |||||||||||||| |||||| Sbjct 11309585 ACTAATAACGGCCATGTACCACCACCCACAGAATCGAGAAAGAGCTATCAGTCTGTC 11309641 >seq33 Length=121428352 Score = 120 bits (132), Expect = 5e-25 Identities = 98/118 (83%), Gaps = 1/118 (1%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||| | | |||||| || |||||| ||||||||||||||| | ||||||| Sbjct 75855664 GCTAGTTAGCATGCCAGGGTCTCATTTGTTATCAGAATTAACCAGACAATTG-CTCCACC 75855606 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||||||||||||||| | || | |||||| |||||||||||| Sbjct 75855605 TTCTAAGAACAGCCATGCACCACCACCCATGGCATTGAAAAAGAGTTATCAATCTGTC 75855548 >seq9 Length=141945777 Score = 104 bits (114), Expect = 4e-20 Identities = 177/253 (70%), Gaps = 28/253 (11%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA--GGGCATCACAGACCTGTTATTGC 72 ||||||||||| | ||||||||| | |||||| ||||||||||| ||| |||||| Sbjct 86542924 GTCAGTGTAGCACATGTGCGGCCCCAGATATCTAAGGGGGCATCACAGGCCTATTATTG- 86542982 Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG 132 |||| | || |||||| | |||| | |||||||||||||| | | | || Sbjct 86542983 CTCAGTC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGAGGATGCCGACAG 86543041 Query 133 -TCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 ||| |||| ||| |||||| | | ||||| || ||| || ||||||||| Sbjct 86543042 CTCG--GGGGTTGCATAACTAGTTAGCATGCCAGAGTCTCATTTGTTGTCAGAATTAACC 86543099 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||||||||||||| | ||||||||||||||||||| |||| || | Sbjct 86543100 TGACAAATCACTCC-----------ATGGCCATGCACCACCACCCACGGAATTGAGGA-- 86543146 Query 244 AGCTATCAATCTG 256 |||||||||||| Sbjct 86543147 GGCTATCAATCTG 86543159 >seq20 Length=149338601 Score = 96.9 bits (106), Expect = 6e-18 Identities = 72/84 (86%), Gaps = 4/84 (5%) Strand=Plus/Minus Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233 |||||| ||||||||||| |||||| |||||| ||||| | ||||||||||| ||| Sbjct 56871577 GGAATTTACCAGACAAATTGCTCCAC----TAAGAATGGCCAGGTACCACCACCCACAGA 56871522 Query 234 ATCAAGAAAGAGCTATCAATCTGT 257 |||||||||||||| ||||||||| Sbjct 56871521 ATCAAGAAAGAGCTGTCAATCTGT 56871498 >seq21 Length=107358006 Score = 95.1 bits (104), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 13/218 (6%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||| ||||| | |||| ||| |||||||||| ||| |||||||||||||| || Sbjct 24242132 GTCAGAATAGCGTGTGTGCAGCCATAGACATCTAAGGTAATCCCAGACCTGTTATTG-CT 24242074 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAAC--CA 129 ||| | || |||||| |||||| ||||||||||||||| | | ||||||| | Sbjct 24242073 CAATC-TCAGGTGGCTGAAAGCCACTAGTCCCTCTAAGAAGTTGGAGGACACCAACTGCT 24242015 Query 130 TAGTCGATGGGGCTAT-TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 || | || | | |||||| | | |||||| || ||||| ||||||||| ||| | Sbjct 24242014 CAGAGGTTGTGTAACTGTTAGCATGCT-AGGTCTTATTTGTTATTGGAATTAACTAGATA 24241956 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226 ||| || | |||||||| || |||| || ||| Sbjct 24241955 AATTGCTTC----ACTAAGAATAGCTGTGCAACATCAC 24241922 >seq6 Length=73112236 Score = 91.5 bits (100), Expect = 2e-16 Identities = 81/100 (81%), Gaps = 6/100 (6%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||| ||| ||||| ||||||||||||||||| ||||||| |||||| ||||||| Sbjct 62460822 GTCTTTTTCATTATCAGAATTAACCAGACAAATTGCTCCACC----AAGAACAGCCATGC 62460767 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| | ||| |||| ||||||||| |||||||||| Sbjct 62460766 ACCACTATCCACGGAATGGAGAAAGAGC--TCAATCTGTC 62460729 >seq1 Length=104504130 Score = 91.5 bits (100), Expect = 2e-16 Identities = 76/93 (82%), Gaps = 4/93 (4%) Strand=Plus/Plus Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225 || |||||||||| |||||| |||||| ||||||||| ||| |||||||||||| | Sbjct 35111929 TCTTTATCGGAATCAACCAGGCAAATCGCTCCACCAA----GAATGGCCATGCACCAACC 35111984 Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| ||||| ||||||| || ||| || ||| Sbjct 35111985 CCCATGGAATCCAGAAAGAACTGTCAGTCAGTC 35112017 >seq2 Length=63256308 Score = 77.0 bits (84), Expect = 5e-12 Identities = 77/100 (77%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| || | || |||||||| || ||||| | || ||||| |||||| | ||||| Sbjct 45611338 GTCTCATTTGACATAGGAATTAAGCAAACAAACCTTTCTACCAATTAAGAATGTCCATGT 45611279 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| |||||| ||||||||||| | ||||| ||||| Sbjct 45611278 ACCATCACCCACAGAATCAAGAACAGGATATCAGCCTGTC 45611239 >seq14 Length=103589943 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||| |||||| |||||||||||| ||||||||||||||||||| || |||| || || Sbjct 10142321 AAAGCACTCCGCCAACTAAGAACAGCCATGCACCACCACCCATGGACTCAAAAATTCACT 10142380 Query 248 ATCAATCTGTC 258 ||| |||||| Sbjct 10142381 GTCAGTCTGTC 10142391 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||| |||||| |||||||||||| ||||||||||||||||||| || |||| || || Sbjct 10144148 AAAGCACTCCGCCAACTAAGAACAGCCATGCACCACCACCCATGGACTCAAAAATTCACT 10144207 Query 248 ATCAATCTGTC 258 ||| |||||| Sbjct 10144208 GTCAGTCTGTC 10144218 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796711393599