Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq10354 313 4e-83
seq2702 275 1e-71
seq10900 159 6e-37
seq11 131 3e-28
seq33 120 5e-25
seq9 104 4e-20
seq20 96.9 6e-18
seq21 95.1 2e-17
seq6 91.5 2e-16
seq1 91.5 2e-16
seq2 77.0 5e-12
seq14 75.2 2e-11
>seq10354
Length=1096
Score = 313 bits (346), Expect = 4e-83
Identities = 221/250 (88%), Gaps = 6/250 (2%)
Strand=Plus/Plus
Query 12 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 71
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGACCTGTTATTG 60
Query 72 CCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC---AGCCACCAACC 128
|||||||||||||| |||| ||| || ||||||||||||||||| | ||| |||
Sbjct 61 CCTCAAACTTCCATCGGCTTGAAACCGATAGTCCCTCTAAGAAGTGGATAACCAGCAA-- 118
Query 129 ATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188
|| | | |||||||| |||||||||||||||||||||||| |||||| ||||||
Sbjct 119 ATGCTAGCACCA-CTATTTAGTAGGTTAAGGTCTCGTTCGTTATCGCAATTAAGCAGACA 177
Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct 178 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCACAAAATCAAGAAAGAGCTC 237
Query 249 TCAATCTGTC 258
||||||||||
Sbjct 238 TCAATCTGTC 247
>seq2702
Length=10521
Score = 275 bits (304), Expect = 1e-71
Identities = 213/253 (84%), Gaps = 10/253 (4%)
Strand=Plus/Minus
Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct 10198 TCAGTGTAGCGCGCGTGCAGCCCAGGACATCTAAGGGCATCACAGACCTGTTATTGCCTT 10139
Query 76 AAACTTCCATTGGCTGGA--AGCCAATAGTCCCTCTAAGAAGCCAGC------CACCAAC 127
|||||||| | | | | | | | |||||||||||||||| | | || |||
Sbjct 10138 AAACTTCCTTGCGATTTATAACCGCAAAGTCCCTCTAAGAAGCGATCACGGGACAGCAAA 10079
Query 128 --CATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAG 185
| || || |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 10078 AGCTTATTCCCGTACCCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAACCAG 10019
Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245
||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 10018 ACAAATCRCTCCACCAACTAAGAACGGCCATGCACCACCACCCAAAGAATCAAGAAAGAG 9959
Query 246 CTATCAATCTGTC 258
|| ||||||||||
Sbjct 9958 CTWTCAATCTGTC 9946
>seq10900
Length=1044
Score = 159 bits (176), Expect = 6e-37
Identities = 97/103 (94%), Gaps = 0/103 (0%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 103 ACTCGCTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACGTCTAAGGGCATCACAGA 44
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTC 104
|||||||||||||||||||||||| |||| ||| || ||||||
Sbjct 43 CCTGTTATTGCCTCAAACTTCCATCGGCTTGAAACCGATAGTC 1
>seq11
Length=140388259
Score = 131 bits (144), Expect = 3e-28
Identities = 99/117 (85%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | || || ||| ||||| |||||||| |||||||||||| ||||
Sbjct 11309525 CTAGTTAGCATGCCAGAGTGTCCTTCATTATCAGAATTAACTAGACAAATCACTTTACCA 11309584
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||| |||||||||| ||||||||||| |||||| |||||||||||||| ||||||
Sbjct 11309585 ACTAATAACGGCCATGTACCACCACCCACAGAATCGAGAAAGAGCTATCAGTCTGTC 11309641
>seq33
Length=121428352
Score = 120 bits (132), Expect = 5e-25
Identities = 98/118 (83%), Gaps = 1/118 (1%)
Strand=Plus/Minus
Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200
|||| |||||| | | |||||| || |||||| ||||||||||||||| | |||||||
Sbjct 75855664 GCTAGTTAGCATGCCAGGGTCTCATTTGTTATCAGAATTAACCAGACAATTG-CTCCACC 75855606
Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||| ||||||||||||||||||| | || | |||||| ||||||||||||
Sbjct 75855605 TTCTAAGAACAGCCATGCACCACCACCCATGGCATTGAAAAAGAGTTATCAATCTGTC 75855548
>seq9
Length=141945777
Score = 104 bits (114), Expect = 4e-20
Identities = 177/253 (70%), Gaps = 28/253 (11%)
Strand=Plus/Plus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAA--GGGCATCACAGACCTGTTATTGC 72
||||||||||| | ||||||||| | |||||| ||||||||||| ||| ||||||
Sbjct 86542924 GTCAGTGTAGCACATGTGCGGCCCCAGATATCTAAGGGGGCATCACAGGCCTATTATTG- 86542982
Query 73 CTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG 132
|||| | || |||||| | |||| | |||||||||||||| | | | ||
Sbjct 86542983 CTCAGTC-TCGGGTGGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGAGGATGCCGACAG 86543041
Query 133 -TCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183
||| |||| ||| |||||| | | ||||| || ||| || |||||||||
Sbjct 86543042 CTCG--GGGGTTGCATAACTAGTTAGCATGCCAGAGTCTCATTTGTTGTCAGAATTAACC 86543099
Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243
||||||||||||| | ||||||||||||||||||| |||| || |
Sbjct 86543100 TGACAAATCACTCC-----------ATGGCCATGCACCACCACCCACGGAATTGAGGA-- 86543146
Query 244 AGCTATCAATCTG 256
||||||||||||
Sbjct 86543147 GGCTATCAATCTG 86543159
>seq20
Length=149338601
Score = 96.9 bits (106), Expect = 6e-18
Identities = 72/84 (86%), Gaps = 4/84 (5%)
Strand=Plus/Minus
Query 174 GGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGA 233
|||||| ||||||||||| |||||| |||||| ||||| | ||||||||||| |||
Sbjct 56871577 GGAATTTACCAGACAAATTGCTCCAC----TAAGAATGGCCAGGTACCACCACCCACAGA 56871522
Query 234 ATCAAGAAAGAGCTATCAATCTGT 257
|||||||||||||| |||||||||
Sbjct 56871521 ATCAAGAAAGAGCTGTCAATCTGT 56871498
>seq21
Length=107358006
Score = 95.1 bits (104), Expect = 2e-17
Identities = 156/218 (72%), Gaps = 13/218 (6%)
Strand=Plus/Minus
Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74
||||| ||||| | |||| ||| |||||||||| ||| |||||||||||||| ||
Sbjct 24242132 GTCAGAATAGCGTGTGTGCAGCCATAGACATCTAAGGTAATCCCAGACCTGTTATTG-CT 24242074
Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAA---GCCAGCCACCAAC--CA 129
||| | || |||||| |||||| ||||||||||||||| | | ||||||| |
Sbjct 24242073 CAATC-TCAGGTGGCTGAAAGCCACTAGTCCCTCTAAGAAGTTGGAGGACACCAACTGCT 24242015
Query 130 TAGTCGATGGGGCTAT-TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188
|| | || | | |||||| | | |||||| || ||||| ||||||||| ||| |
Sbjct 24242014 CAGAGGTTGTGTAACTGTTAGCATGCT-AGGTCTTATTTGTTATTGGAATTAACTAGATA 24241956
Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCAC 226
||| || | |||||||| || |||| || |||
Sbjct 24241955 AATTGCTTC----ACTAAGAATAGCTGTGCAACATCAC 24241922
>seq6
Length=73112236
Score = 91.5 bits (100), Expect = 2e-16
Identities = 81/100 (81%), Gaps = 6/100 (6%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
|||| ||| ||||| ||||||||||||||||| ||||||| |||||| |||||||
Sbjct 62460822 GTCTTTTTCATTATCAGAATTAACCAGACAAATTGCTCCACC----AAGAACAGCCATGC 62460767
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||| | ||| |||| ||||||||| ||||||||||
Sbjct 62460766 ACCACTATCCACGGAATGGAGAAAGAGC--TCAATCTGTC 62460729
>seq1
Length=104504130
Score = 91.5 bits (100), Expect = 2e-16
Identities = 76/93 (82%), Gaps = 4/93 (4%)
Strand=Plus/Plus
Query 166 TCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCA 225
|| |||||||||| |||||| |||||| ||||||||| ||| |||||||||||| |
Sbjct 35111929 TCTTTATCGGAATCAACCAGGCAAATCGCTCCACCAA----GAATGGCCATGCACCAACC 35111984
Query 226 CCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
||||| ||||| ||||||| || ||| || |||
Sbjct 35111985 CCCATGGAATCCAGAAAGAACTGTCAGTCAGTC 35112017
>seq2
Length=63256308
Score = 77.0 bits (84), Expect = 5e-12
Identities = 77/100 (77%), Gaps = 0/100 (0%)
Strand=Plus/Minus
Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218
||||| || | || |||||||| || ||||| | || ||||| |||||| | |||||
Sbjct 45611338 GTCTCATTTGACATAGGAATTAAGCAAACAAACCTTTCTACCAATTAAGAATGTCCATGT 45611279
Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||| |||||| ||||||||||| | ||||| |||||
Sbjct 45611278 ACCATCACCCACAGAATCAAGAACAGGATATCAGCCTGTC 45611239
>seq14
Length=103589943
Score = 75.2 bits (82), Expect = 2e-11
Identities = 59/71 (83%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||| |||||| |||||||||||| ||||||||||||||||||| || |||| || ||
Sbjct 10142321 AAAGCACTCCGCCAACTAAGAACAGCCATGCACCACCACCCATGGACTCAAAAATTCACT 10142380
Query 248 ATCAATCTGTC 258
||| ||||||
Sbjct 10142381 GTCAGTCTGTC 10142391
Score = 75.2 bits (82), Expect = 2e-11
Identities = 59/71 (83%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247
||| |||||| |||||||||||| ||||||||||||||||||| || |||| || ||
Sbjct 10144148 AAAGCACTCCGCCAACTAAGAACAGCCATGCACCACCACCCATGGACTCAAAAATTCACT 10144207
Query 248 ATCAATCTGTC 258
||| ||||||
Sbjct 10144208 GTCAGTCTGTC 10144218
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796711393599
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |