Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq23 228 1e-57 seq9 226 5e-57 seq25 224 2e-56 seq2 178 2e-42 seq28 172 9e-41 seq16 145 1e-32 seq5 145 1e-32 seq21 141 2e-31 seq31 116 6e-24 seq18 96.9 6e-18 seq1 95.1 2e-17 seq3 80.6 5e-13 >seq23 Length=109465363 Score = 228 bits (252), Expect = 1e-57 Identities = 146/159 (92%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135 ||||||| |||| |||||||||||||||||| |||||||| |||||| ||||| || Sbjct 93983622 AGCTCACATTCCTTATTAGTGGGTGAACAATTCAACGCTTGGTGAATTCGGCTTCACAAT 93983681 Query 136 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 93983682 GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCC 93983741 Query 196 ACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||| ||||||||||||||||| ||| || Sbjct 93983742 ACAAGCCAGTTATCACTGTGGTAACTTTTCTGACACTTC 93983780 >seq9 Length=141945777 Score = 226 bits (250), Expect = 5e-57 Identities = 208/263 (79%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||| |||||| | |||| |||||| | |||||| |||| |||||||||| || Sbjct 49162425 TCATTAGTAGAGTAAAATTTACCTATCTCATAGCAGTCTAAGCCCAACTCACGTTCCATA 49162366 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||| |||||||||||||| ||| |||| |||| || ||||||||||||| || Sbjct 49162365 TTAGTGAGTGAACAATCCAACACTTGGTGAATCCTGCCTCTCAGTGATAGGAAGAGCAGA 49162306 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 || ||||||||| ||||| |||| ||| |||| |||| || ||||||||||||||||| Sbjct 49162305 CAAAGAAGGATCAGAAAGCGACGTTGCTGTGAATGCTTAGCCACCACAAGCCAGTTATCC 49162246 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||| || |||||||| ||| || || | ||| | | || | |||||||| ||| Sbjct 49162245 CTGTGTTAGCTTTTCTGACACTTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCGTGAGG 49162186 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 49162185 CCCCGCTTTCACGGTCTGTATTC 49162163 >seq25 Length=96537449 Score = 224 bits (248), Expect = 2e-56 Identities = 151/169 (89%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||| ||||||||||||||||| |||||||||||| |||||||| ||||||| Sbjct 89099159 TCATCAGTAGGGGAAAACTAACCTGTCTCAAGACGGTCTAAACACAGCTCACATTCCCTA 89099100 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||| ||||||||||| |||| |||||||||||| ||||||||||||||||| Sbjct 89099099 TTAGTGGATGAACAATCCAGTGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 89099040 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 |||||||||||||||||||||| ||||| ||||| |||||| |||||| Sbjct 89099039 CATCGAAGGATCAAAAAGCAACATCGCTGTGAACACTTGGCCACCACAA 89098991 >seq2 Length=63256308 Score = 178 bits (196), Expect = 2e-42 Identities = 119/133 (89%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 35 CAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAG 94 |||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct 51976671 CAGTAGGGTAAACGTAACCTGTCTCAGGACGGTCCAAACCCAGCTCACGTTCCCTATTAG 51976730 Query 95 TGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 |||||||||||||||||||| |||||||||||| |||||| |||||| |||||| Sbjct 51976731 GGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAAGAAGAGTTGACATC 51976790 Query 155 GAAGGATCAAAAA 167 ||||||||||||| Sbjct 51976791 GAAGGATCAAAAA 51976803 Score = 132 bits (146), Expect = 8e-29 Identities = 99/116 (85%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 |||||||| ||| ||||||||||||| |||||||||| ||||||||| ||| || Sbjct 11284665 GAATTCTGTTTCACAGTGATAGGAAGAGCTGACATCGAAGAATCAAAAAGTGGTGTCACT 11284724 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||| ||||||| ||||||||||||||||||||||||| | |||||| Sbjct 11284725 GTGAACGCTTGGCCGCCACAAACCAGTTATCCCTGTGGTAACTTTTCAGACACCTC 11284780 >seq28 Length=82073021 Score = 172 bits (190), Expect = 9e-41 Identities = 216/294 (73%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 2 ACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | | |||||||| | | || ||| ||||||||| ||||||||||||||| Sbjct 58731308 ACTAATCAGCATTACCATGGCAACAACATATCAACAGTAGGGTGAAACTAACCTGTCTCT 58731249 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || || || ||||||||| ||| ||||| | ||||||||||| || || || Sbjct 58731248 CCACAGTGAAATTCCAGCTCACATTCTCTATTCG--GGTGAACAATCTGACCGTTGATGA 58731191 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 ||| |||||| |||||| |||||||| ||||| ||| | || |||| | ||||||| Sbjct 58731190 ATTGTGCTTCACAATGATAAGAAGAGCCAACATCCAAGAACGGAAGAGCAGCATCGCTAT 58731131 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||| || ||||||| |||| ||||||| ||| ||||| || ||||| || ||| | | Sbjct 58731130 GAATACTCGGCTGCCCCAAGTCAGTTATGCCTCTGGTAGCTCTTCTGACATCTCCTACTT 58731071 Query 241 CAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 |||| | || | |||||| |||| |||||||||||| |||||||| Sbjct 58731070 AAAATGCAAAAGGTCAGCAGGATCACGAGGCTCCACTTTCATGGTCTGTATTCA 58731017 >seq16 Length=62950657 Score = 145 bits (160), Expect = 1e-32 Identities = 138/176 (78%), Gaps = 9/176 (5%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA--ACGTCG 176 |||||||||||| |||||||||||| ||||||||||||||||| | ||| Sbjct 18301003 GAATTCTGCTTCACAATGATAGGAAGA-------TCGAAGGATCAAAAAGCCCGATGTCA 18301055 Query 177 CTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTA 236 | ||||||||||||| || |||||||||||||||||||||||||||||||| |||||| Sbjct 18301056 CCATGAACGCTTGGCCGCAACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCT 18301115 Query 237 GCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 || | ||| ||| || | |||| ||| ||||| |||||| ||| |||||| Sbjct 18301116 GCTTAAAACCCCGAAGGTCAGAAGGGTCGGGAGGCCCTGCTTTCACGGTCTGTATT 18301171 >seq5 Length=178027732 Score = 145 bits (160), Expect = 1e-32 Identities = 110/129 (85%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 |||||||| | |||||| |||||||||||||| ||||||||||||||||||||| ||||| Sbjct 104738830 TAGGAAGAACTGACATCAAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCAC 104738771 Query 198 AAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTA 257 ||||||||||||||||||||||| |||||| ||||| || | |||| || | || | Sbjct 104738770 AAGCCAGTTATCCCTGTGGTAACGTTTCTGACACCT---GCTTAAAATCTCAAAGGTCAG 104738714 Query 258 AAGGATCGA 266 |||||| || Sbjct 104738713 AAGGATAGA 104738705 Score = 102 bits (112), Expect = 1e-19 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||| |||||||| |||||| |||||||||| ||| || Sbjct 96181504 TCATCAGTAGGGTAAAACTAACCTTTCTCATGATGGTCTATACCCAGCTCATATTCTCTT 96181563 Query 91 TTAGTGGGTGAACAAT 106 ||||||||||||| || Sbjct 96181564 TTAGTGGGTGAACCAT 96181579 >seq21 Length=107358006 Score = 141 bits (156), Expect = 2e-31 Identities = 114/138 (83%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 ||||||||||||||| | |||||||||| ||||||| ||||||| |||||||||||||| Sbjct 84225156 GAAGGATCAAAAAGCGATCTCGCTATGAATGCTTGGCCGCCACAAACCAGTTATCCCTGT 84225215 Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCAC 274 ||||||||||||| |||||| || | |||| || || | |||||||| ||||| Sbjct 84225216 GGTAACTTTTCTGAGACCTCTTGCTTAAAATGCTGAAGGTCAGAAGGATCGTGAGGCCCT 84225275 Query 275 ACTTTCATGGTTTGTATT 292 |||||||||| |||||| Sbjct 84225276 GCTTTCATGGTCTGTATT 84225293 >seq31 Length=75455120 Score = 116 bits (128), Expect = 6e-24 Identities = 96/116 (83%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 1380762 TCATCGGTAGGGTAAAACTAACCTGTCTCACAGCGGTCTAGACCCAGCTCACGTTCCCTG 1380703 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 |||||||||||||| | || |||| || |||| || ||| ||| |||| ||| Sbjct 1380702 TTAGTGGGTGAACAGACAAATGCTTGGTGAGTTCTTCTCTGGT-TGAGAGGATGAG 1380648 >seq18 Length=152661129 Score = 96.9 bits (106), Expect = 6e-18 Identities = 64/71 (90%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 76 AGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTAT 135 |||||||||||||||||||||||||||||||| ||||||| |||||||||||| || Sbjct 30163046 AGCTCACGTTCCCTATTAGTGGGTGAACAATCTAACGCTTGGTGAATTCTGCTTCACAAT 30162987 Query 136 GATAGGAAGAG 146 ||||||||||| Sbjct 30162986 GATAGGAAGAG 30162976 >seq1 Length=104504130 Score = 95.1 bits (104), Expect = 2e-17 Identities = 55/57 (96%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 178 TATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| Sbjct 64991882 TATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC 64991826 >seq3 Length=88455658 Score = 80.6 bits (88), Expect = 5e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||| ||||||||||||| |||| |||||| ||||| |||||||||||||| | Sbjct 42122569 ATTAGTGTGTGAACAATCCAATGCTTGGTGAATTCCGCTTCACAATGATAGGAAGAGCTG 42122628 Query 150 ACATCGAAGGATCA 163 || || |||||||| Sbjct 42122629 ACGTCAAAGGATCA 42122642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854301923424