Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq10900 349 7e-94
seq2702 237 3e-60
seq10354 188 1e-45
seq11 114 2e-23
seq34 109 1e-21
>seq10900
Length=1044
Score = 349 bits (386), Expect = 7e-94
Identities = 227/247 (92%), Gaps = 3/247 (1%)
Strand=Plus/Plus
Query 83 GACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGA 141
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GACTATCGGTTTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGA 60
Query 142 TGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGA 201
||||||||||||||||||||||||||||| |||||| ||||| | ||||||||||
Sbjct 61 CGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTCTA--ACCTTGGCCGAG 118
Query 202 AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCT 261
|||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||||
Sbjct 119 AGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATTGCT 178
Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCC 321
|||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||
Sbjct 179 CTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCC 238
Query 322 CTTTGTA 328
|||||||
Sbjct 239 CTTTGTA 245
>seq2702
Length=10521
Score = 237 bits (262), Expect = 3e-60
Identities = 252/322 (78%), Gaps = 19/322 (6%)
Strand=Plus/Plus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGC---CAGGCCC--GCTTTGGCGGGTCGCCG---- 70
|| ||||||||||||||||||||||| | || ||||| || | || |||
Sbjct 10037 GAACGAGACCTTAACCTGCTAAATAGGGTACGGGAATAAGCTTTTGCTG-TC-CCGTGAT 10094
Query 71 -GCTTCTTAGAGGGACTAT-CGGCTC--AAGCCGATGGAAGTTTGAGGCAATAACAGGTC 126
|||||||||||||||| | ||| | || | | |||||||| |||||||||||||||
Sbjct 10095 CGCTTCTTAGAGGGACTTTGCGGTTATAAATCGCAAGGAAGTTTAAGGCAATAACAGGTC 10154
Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186
|||||||||||||||||| |||||| |||||||||||||||||| || ||||||
Sbjct 10155 TGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTACACTGATGCGTTCATCGAGTTT 10214
Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246
|| ||||||||| ||| | |||||||||| | || | ||||| ||||||| ||
Sbjct 10215 AT--CCTTGGCCGAGAGGCCCGGGTAATCTT-TAGTACGC-ATCGTGATGGGGATCGATT 10270
Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306
|||||||||||| || | |||||||||||||||||| |||| ||||||||| | |
Sbjct 10271 ATTGCAATTATTAATCGTGAACGAGGAATGCCTAGTATGCGCAAGTCATCAGCTTGTGCA 10330
Query 307 GATTACGTCCCTGCCCTTTGTA 328
||||||||||||||||||||||
Sbjct 10331 GATTACGTCCCTGCCCTTTGTA 10352
>seq10354
Length=1096
Score = 188 bits (208), Expect = 1e-45
Identities = 136/156 (87%), Gaps = 1/156 (1%)
Strand=Plus/Minus
Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79
|| |||||||||||||| |||||||| || || || || ||| | ||||||||
Sbjct 156 GAACGAGACCTTAACCTACTAAATAGTGGTGCTAGCATTTGCTGGTTATCCACTTCTTAG 97
Query 80 AGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 96 AGGGACTATCGGTTTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 37
Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174
||| ||||||||||||||||||||||||||||| ||
Sbjct 36 AGACGTTCTGGGCCGCACGCGCGCTACACTGACGGA 1
>seq11
Length=140388259
Score = 114 bits (126), Expect = 2e-23
Identities = 131/176 (74%), Gaps = 0/176 (0%)
Strand=Plus/Plus
Query 153 GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTA 212
|||| |||||||||||||| | || || || | | ||| ||||| ||| |||||
Sbjct 15574087 GCACACGCGCTACACTGACTGGCTCAGCGTGTGCCTACCCTGTGCCGGCAGGCGCGGGTA 15574146
Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272
| | | || | | ||||| ||||||| | | |||||||||||| | | | |||||||
Sbjct 15574147 ACCCGTTGAACCCCATTCGTGATGGGGATTGGGGATTGCAATTATTCCCCATGAACGAGG 15574206
Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||| || |||||| || ||| | ||| ||||||||| ||||||||||||||||
Sbjct 15574207 AATTCCCAGTAAGTGCAGGTCGTAAGCTTACGTTGATTAAGTCCCTGCCCTTTGTA 15574262
>seq34
Length=181543317
Score = 109 bits (120), Expect = 1e-21
Identities = 84/100 (84%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288
||||| ||||||| | | |||||||||||| | | | |||||||||| || |||||| ||
Sbjct 150410884 TCGTGATGGGGATCGGGGATTGCAATTATTCCCCGTGAACGAGGAATTCCCAGTAAGTGC 150410943
Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
| ||||| ||| |||||||||| ||||||||||||||||
Sbjct 150410944 GGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA 150410983
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947091270912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |