Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq10900 349 7e-94 seq2702 237 3e-60 seq10354 188 1e-45 seq11 114 2e-23 seq34 109 1e-21 >seq10900 Length=1044 Score = 349 bits (386), Expect = 7e-94 Identities = 227/247 (92%), Gaps = 3/247 (1%) Strand=Plus/Plus Query 83 GACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGA 141 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GACTATCGGTTTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGA 60 Query 142 TGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGA 201 ||||||||||||||||||||||||||||| |||||| ||||| | |||||||||| Sbjct 61 CGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAGTCTA--ACCTTGGCCGAG 118 Query 202 AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCT 261 |||||| ||||||||||| |||||| ||||||||||||||||||||||| |||||||||| Sbjct 119 AGGTCTTGGTAATCTTGTGAAACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATTGCT 178 Query 262 CTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCC 321 |||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||| Sbjct 179 CTTCAACGAGGAATTCCTAGTAAGCGCAAGTCATCAGCTTGCGTTGATTACGTCCCTGCC 238 Query 322 CTTTGTA 328 ||||||| Sbjct 239 CTTTGTA 245 >seq2702 Length=10521 Score = 237 bits (262), Expect = 3e-60 Identities = 252/322 (78%), Gaps = 19/322 (6%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGC---CAGGCCC--GCTTTGGCGGGTCGCCG---- 70 || ||||||||||||||||||||||| | || ||||| || | || ||| Sbjct 10037 GAACGAGACCTTAACCTGCTAAATAGGGTACGGGAATAAGCTTTTGCTG-TC-CCGTGAT 10094 Query 71 -GCTTCTTAGAGGGACTAT-CGGCTC--AAGCCGATGGAAGTTTGAGGCAATAACAGGTC 126 |||||||||||||||| | ||| | || | | |||||||| ||||||||||||||| Sbjct 10095 CGCTTCTTAGAGGGACTTTGCGGTTATAAATCGCAAGGAAGTTTAAGGCAATAACAGGTC 10154 Query 127 TGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTC 186 |||||||||||||||||| |||||| |||||||||||||||||| || |||||| Sbjct 10155 TGTGATGCCCTTAGATGTCCTGGGCTGCACGCGCGCTACACTGATGCGTTCATCGAGTTT 10214 Query 187 ATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGC 246 || ||||||||| ||| | |||||||||| | || | ||||| ||||||| || Sbjct 10215 AT--CCTTGGCCGAGAGGCCCGGGTAATCTT-TAGTACGC-ATCGTGATGGGGATCGATT 10270 Query 247 ATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTT 306 |||||||||||| || | |||||||||||||||||| |||| ||||||||| | | Sbjct 10271 ATTGCAATTATTAATCGTGAACGAGGAATGCCTAGTATGCGCAAGTCATCAGCTTGTGCA 10330 Query 307 GATTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||||| Sbjct 10331 GATTACGTCCCTGCCCTTTGTA 10352 >seq10354 Length=1096 Score = 188 bits (208), Expect = 1e-45 Identities = 136/156 (87%), Gaps = 1/156 (1%) Strand=Plus/Minus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || |||||||||||||| |||||||| || || || || ||| | |||||||| Sbjct 156 GAACGAGACCTTAACCTACTAAATAGTGGTGCTAGCATTTGCTGGTTATCCACTTCTTAG 97 Query 80 AGGGACTATCGGCT-CAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 96 AGGGACTATCGGTTTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 37 Query 139 AGATGTTCTGGGCCGCACGCGCGCTACACTGACAGA 174 ||| ||||||||||||||||||||||||||||| || Sbjct 36 AGACGTTCTGGGCCGCACGCGCGCTACACTGACGGA 1 >seq11 Length=140388259 Score = 114 bits (126), Expect = 2e-23 Identities = 131/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 153 GCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTA 212 |||| |||||||||||||| | || || || | | ||| ||||| ||| ||||| Sbjct 15574087 GCACACGCGCTACACTGACTGGCTCAGCGTGTGCCTACCCTGTGCCGGCAGGCGCGGGTA 15574146 Query 213 ATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGG 272 | | | || | | ||||| ||||||| | | |||||||||||| | | | ||||||| Sbjct 15574147 ACCCGTTGAACCCCATTCGTGATGGGGATTGGGGATTGCAATTATTCCCCATGAACGAGG 15574206 Query 273 AATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| || |||||| || ||| | ||| ||||||||| |||||||||||||||| Sbjct 15574207 AATTCCCAGTAAGTGCAGGTCGTAAGCTTACGTTGATTAAGTCCCTGCCCTTTGTA 15574262 >seq34 Length=181543317 Score = 109 bits (120), Expect = 1e-21 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | | |||||||||||| | | | |||||||||| || |||||| || Sbjct 150410884 TCGTGATGGGGATCGGGGATTGCAATTATTCCCCGTGAACGAGGAATTCCCAGTAAGTGC 150410943 Query 289 GTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||| ||| |||||||||| |||||||||||||||| Sbjct 150410944 GGGTCATAAGCTTGCGTTGATTAAGTCCCTGCCCTTTGTA 150410983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947091270912