Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq24 426 5e-117 seq20 342 2e-91 seq18 275 2e-71 seq5 237 5e-60 seq33 223 1e-55 seq1 143 9e-32 seq11 123 8e-26 seq23 102 3e-19 seq15 100 9e-19 >seq24 Length=78163535 Score = 426 bits (472), Expect = 5e-117 Identities = 274/299 (92%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 235 GGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTC 294 ||| | ||||||||||| |||||||| ||| ||||| | | | ||||||||||||| Sbjct 37509829 GGCGCTCACTTATTCTATACCTCTCATGTCTCTTCACCGTGCCAGCTTAGAGTCAAGCTC 37509888 Query 295 AACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCT 354 ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| Sbjct 37509889 AACAGGGTCTTCTTTCCTGGCTGATTCCGCCAAACCCGTTCCCTTGGCTGTGGTTTCGCT 37509948 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 37509949 GGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGA 37510008 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 37510009 TGATGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCATTTACCCGCGCTT 37510068 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| Sbjct 37510069 CATTGAATTTCTTCACTTGGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 37510127 Score = 172 bits (190), Expect = 2e-40 Identities = 125/144 (87%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 || ||||| ||||| || ||||||||| ||| |||||||||||| ||||| ||||||||| Sbjct 38691846 GACAGTAGGTAGGGGCATTGGGAATCTTGTTCATCCATTCATGCACGTCATTAATTAGAT 38691787 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||| |||||||||||||||||||||||||||||||||||||| || ||||| |||| Sbjct 38691786 GACAAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCACCATTTAC---TGCTTC 38691730 Query 476 GTTGAATTTCTTCACTTTGACATT 499 ||| | ||||||||||||||||| Sbjct 38691729 ATTGGACTTCTTCACTTTGACATT 38691706 >seq20 Length=149338601 Score = 342 bits (378), Expect = 2e-91 Identities = 227/251 (90%), Gaps = 1/251 (0%) Strand=Plus/Plus Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 |||||||| ||| |||||||||||||||| ||||||| ||||||||| |||| |||||| Sbjct 114507371 GAGTCAAGTTCAGTAGGGTCTTCTTTCCCCACTGATTCTGCCAAGCCCATTCCTTTGGCT 114507430 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 ||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||| || Sbjct 114507431 GTGGTTTCGAGGGATAGTAGGTAGAGACAGTGGGAATCTCTTTGATCCATTCATGCGAGT 114507490 Query 404 CACTAATTAGATGACGAGGCA-TTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGT 462 ||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 114507491 CACTAATTAGATGACAAGGCATTTTGGCTATCTTAAGAGAGTCATAGTTACTCCCGCCGT 114507550 Query 463 TTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 114507551 TTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGTAGAAATCACA 114507610 Query 523 TTGCGTCAACA 533 | || || ||| Sbjct 114507611 TCGCATCGACA 114507621 Score = 201 bits (222), Expect = 4e-49 Identities = 137/153 (90%), Gaps = 1/153 (1%) Strand=Plus/Minus Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 || || |||||||||||||| || |||||||||||| |||||||||||||||||| |||| Sbjct 35415724 TCATTCATCCATTCATGCGCATCGCTAATTAGATGATGAGGCATTTGGCTACCTTTAGAG 35415665 Query 442 AGTCATAGTTACTCCCGCCGTTTA-CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||||||||||||| |||| ||| ||||| |||||||||||||||||||||||| Sbjct 35415664 AGTCATAGTTACTCCCGCCATTTACCCCACGCTTCATTGAATTTCTTCACTTTGACATTC 35415605 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||| |||||||||||||| ||||||| Sbjct 35415604 AGAGCACCAGGCAGAAATCACATCTTGTCAACA 35415572 >seq18 Length=152661129 Score = 275 bits (304), Expect = 2e-71 Identities = 243/300 (81%), Gaps = 4/300 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||| ||||||||||| | || ||||| | | |||||||||||| |||| Sbjct 106336671 CTCCCACTTACTCTACACCTCTTATATCTCTTCACTGTGCCAGACTAGAGTCAAATTCAA 106336730 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || ||||||||||| | ||||||||| |||| | |||||||||||||||||||| || | Sbjct 106336731 CAAGGTCTTCTTTCGCAGCTGATTCCACCAAATCTGTTCCCTTGGCTGTGGTTTC-CTGG 106336789 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||| || |||||||| |||||||| || || |||||||| |||||| |||||| ||| Sbjct 106336790 ATAGCAGGTAGGGACAATGGGAATCGGATTCATTCATTCATGTGCGTCAGTAATTACATG 106336849 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||| |||||||||||||||| |||| | | |||||| || ||| | || | | Sbjct 106336850 ATGAGGCTTTTGGCTACCTTAAGACAGTCGT--TAACTCCCACCACTTATCTGC-CCTCA 106336906 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATCA 536 |||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||| || Sbjct 106336907 CTGAATTTCTTTACTATGACATTCAGAGCACTGAGCAGAAATCACATCCGGTCAACACCA 106336966 Score = 114 bits (126), Expect = 4e-23 Identities = 131/174 (75%), Gaps = 13/174 (7%) Strand=Plus/Minus Query 283 AGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGC 342 ||| | |||||||| ||| ||||| || ||||||| ||||| | || |||||| Sbjct 57593427 AGAATTAAGCTCAA---GGTGGTCTTTGCCTGCTGATTGTGCCAAACTAATTGTCTTGGC 57593371 Query 343 TGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCG 402 ||| |||| | |||| | | |||||||||||||| | | ||||||| || Sbjct 57593370 AGTG-TTTCAGTGGATACTGGGTAGGGACAGTGGGAGT--------TGCATTCATAGGCA 57593320 Query 403 TCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 456 ||||| |||||||| |||||||||||||| ||||| ||||||||||||||||| Sbjct 57593319 TCACTGTTTAGATGATGAGGCATTTGGCTATCTTAA-AGAGTCATAGTTACTCC 57593267 >seq5 Length=178027732 Score = 237 bits (262), Expect = 5e-60 Identities = 189/228 (83%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||| |||||||||||| || ||||||||||||||| |||| || ||||||| | Sbjct 122117289 CTTTCCCCACTGATTCCGCCAGGCTTGTTCCCTTGGCTGTGATTTCACTGCATAGTAGGT 122117230 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||| | ||||| || |||||| ||||| | ||||||||||||||| ||||||| Sbjct 122117229 AGGGACAGTGAGGATCTCATTCATCCATACATGCACATCACTAATTAGATGATGAGGCAT 122117170 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||| ||||||||||||| ||||||||||| || |||| | || || ||||||||| Sbjct 122117169 TTGGCTTCCTTAAGAGAGTCTTAGTTACTCCCACCATTTATCTGCATTTCATTGAATTTC 122117110 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||| || | ||||||||||| | |||||| Sbjct 122117109 TTCACTTTGACATTCGGA-------GAAGAAATCACATCACATCAACA 122117069 >seq33 Length=121428352 Score = 223 bits (246), Expect = 1e-55 Identities = 173/206 (84%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||| |||| |||| ||||| ||| ||||| | | | ||| |||||||||||||| Sbjct 112077908 CTCCCACATATTTTACATGTCTCAGGTCTCTTCACCATGCCAGACCAGAGTCAAGCTCAA 112077967 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||||||||||| ||||||| |||| || ||||||||| || |||||| ||| | Sbjct 112077968 CAGGGTCTTCTTTCCCCACTGATTCTGCCATACCTGTTCCCTTGCCTATGGTTTTGCTGG 112078027 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 || |||| |||||||| ||| | |||| || ||||||||||| ||||||||| ||||| Sbjct 112078028 ATTGTAGGTAGGGACAATGGAAGTCTCCTTCATCCATTCATGGACGTCACTAACTAGATC 112078087 Query 417 ACGAGGCATTTGGCTACCTTAAGAGA 442 | |||||||||||||||||||||||| Sbjct 112078088 ATGAGGCATTTGGCTACCTTAAGAGA 112078113 >seq1 Length=104504130 Score = 143 bits (158), Expect = 9e-32 Identities = 96/106 (91%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 352 GCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT 411 ||| ||||||||| |||||||||||||||||| | |||||||||||| | ||||||||| Sbjct 7271455 GCTGGATAGTAGAAAGGGACAGTGGGAATCTCTCTCATCCATTCATGCACATCACTAATT 7271514 Query 412 AGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG-TTACTCC 456 |||||| ||||||||||||||||||||||||||||||| ||| ||| Sbjct 7271515 AGATGATGAGGCATTTGGCTACCTTAAGAGAGTCATAGATTAATCC 7271560 >seq11 Length=140388259 Score = 123 bits (136), Expect = 8e-26 Identities = 100/121 (83%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 406 CTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTA 465 ||||||||||||| ||||||||||||||||||||||| || | |||||| | |||| Sbjct 58795837 CTAATTAGATGACAAGGCATTTGGCTACCTTAAGAGATTCTTGGTTACTTTTATCATTTA 58795778 Query 466 CCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTG 525 || | ||| ||| ||||||||| ||||||||||||| |||| ||||||||||| | || Sbjct 58795777 CCAGAACTTCATTGTATTTCTTCATTTTGACATTCAGAACACTAGGCAGAAATCATACTG 58795718 Query 526 C 526 | Sbjct 58795717 C 58795717 Score = 84.2 bits (92), Expect = 7e-14 Identities = 110/147 (75%), Gaps = 4/147 (3%) Strand=Plus/Plus Query 372 AGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCT 431 |||| |||||| | | || |||||| | | || ||| |||||||| || || |||| Sbjct 81030106 AGTGAGAATCTTGGTCATGAATTCATATATGACTCTGATTGGATGACGAAGCGTT-GGCT 81030164 Query 432 ACCTTAAGA-GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCAC 490 |||| |||| || |||||||||||| ||| |||| | ||| |||||||||||| | Sbjct 81030165 ACCTGAAGAAGAATCATAGTTACTCT-GCCATTTATTTGA-CTTCATTGAATTTCTTCGC 81030222 Query 491 TTTGACATTCAGAGCACTGGGCAGAAA 517 | |||| || | | |||||||||||| Sbjct 81030223 TCTGACGTTGAATGTACTGGGCAGAAA 81030249 >seq23 Length=109465363 Score = 102 bits (112), Expect = 3e-19 Identities = 87/107 (81%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 93983873 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 93983932 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||| |||||||||||||||| || |||| Sbjct 93983933 GTTTGACAGGTGTACCGCC----CCAAACTCCCCACCTGGCACTGTC 93983975 >seq15 Length=125274996 Score = 100 bits (110), Expect = 9e-19 Identities = 87/107 (81%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||||||| || |||| |||| ||| || || ||||||||||||||||| Sbjct 74426788 CTTCTGCTCCACAGGAGGTTACTGTCCTCCCTGATTCGCC-TTAGGACACCTGCGTTACC 74426730 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 | || |||| |||||||||| || || |||||||||||| | |||| Sbjct 74426729 GCTTGACAGGTGTGCCGCCCTAGTCACACTCCCCACCTGGCGCTGTC 74426683 Score = 95.1 bits (104), Expect = 4e-17 Identities = 117/159 (74%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 ||| | | ||||||| ||| |||| || | |||| ||||| || ||| |||||||| Sbjct 19304244 AGTTAGGTTCAACAGAGTCCTCTTCATCCACAGATTTTGCCAAACCA-TTCTCTTGGCTG 19304302 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 | ||||| ||| | ||| | || ||| || || || || |||||||||| | Sbjct 19304303 TAGTTTCATCAGAAAATAGGTGAAGAGAGTAGGGATATCATTCTTCCATTCATGTATACC 19304362 Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAG 443 || ||||||||| |||| |||||||||||||||||||| Sbjct 19304363 CCTCATTAGATGATGAGGAATTTGGCTACCTTAAGAGAG 19304401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635012295392