Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017
-06-19] 11,479 sequences; 3,438,623,608 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq3 77.0 5e-12
seq7 75.2 2e-11
seq2 75.2 2e-11
>seq3
Length=88455658
Score = 77.0 bits (84), Expect = 5e-12
Identities = 61/72 (85%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107
|||| || || || |||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 74271568 CTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACACCTCTAAGTC 74271509
Query 108 AGAATCCATGCC 119
||||||| ||||
Sbjct 74271508 AGAATCC-TGCC 74271498
>seq7
Length=66841537
Score = 75.2 bits (82), Expect = 2e-11
Identities = 67/84 (80%), Gaps = 0/84 (0%)
Strand=Plus/Plus
Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90
||||| | || | || |||| || || || |||||||||||||||| || |||||
Sbjct 13680771 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGGTTATGA 13680830
Query 91 CTGAACGCCTCTAAGTCAGAATCC 114
|| |||||||||||||||||||||
Sbjct 13680831 CTCAACGCCTCTAAGTCAGAATCC 13680854
>seq2
Length=63256308
Score = 75.2 bits (82), Expect = 2e-11
Identities = 46/49 (94%), Gaps = 0/49 (0%)
Strand=Plus/Minus
Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
|||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 51976578 GAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 51976530
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819108902656
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |