Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq3 77.0 5e-12 seq7 75.2 2e-11 seq2 75.2 2e-11 >seq3 Length=88455658 Score = 77.0 bits (84), Expect = 5e-12 Identities = 61/72 (85%), Gaps = 1/72 (1%) Strand=Plus/Minus Query 48 CTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTC 107 |||| || || || |||||||||||||||| |||||||| |||||| |||||||||| Sbjct 74271568 CTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACACCTCTAAGTC 74271509 Query 108 AGAATCCATGCC 119 ||||||| |||| Sbjct 74271508 AGAATCC-TGCC 74271498 >seq7 Length=66841537 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || |||||||||||||||| || ||||| Sbjct 13680771 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGGTTATGA 13680830 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 || ||||||||||||||||||||| Sbjct 13680831 CTCAACGCCTCTAAGTCAGAATCC 13680854 >seq2 Length=63256308 Score = 75.2 bits (82), Expect = 2e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 51976578 GAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 51976530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819108902656