Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cervus_20elaphus_20hippelaphus_20[genbank_20GCA_5F002197005.1_202017 -06-19] 11,479 sequences; 3,438,623,608 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq2702 502 7e-140 seq11 219 1e-54 seq10354 185 3e-44 seq25 183 9e-44 seq20 96.9 1e-17 seq33 95.1 4e-17 seq2 95.1 4e-17 seq34 91.5 4e-16 seq5 91.5 4e-16 seq3 89.7 2e-15 seq10 87.8 5e-15 seq15 84.2 7e-14 seq23 82.4 2e-13 seq1128 77.0 1e-11 seq12 77.0 1e-11 seq9 77.0 1e-11 >seq2702 Length=10521 Score = 502 bits (556), Expect = 7e-140 Identities = 417/501 (83%), Gaps = 23/501 (5%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCC 64 |||||||||||||||||| || |||| |||| ||||| ||||||||||||||| Sbjct 9250 TCATTCCAATTACAAGACATTAA---GCCCCGTATTGTTATTTCTTGTCACTACCTCCCT 9194 Query 65 GTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTC 124 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 9193 GTGTCAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTRGATGTGGTAGCCGTTTCTC 9134 Query 125 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCC 184 ||||||||||||||||||||||||||||||||||||||||||| | | || |||||||| Sbjct 9133 AGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTCGTTGCCCCGGTAGGCC 9074 Query 185 ACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAG 244 | || |||||| || |||| ||||||| |||||| |||||||| ||||||| || ||| Sbjct 9073 AATACCCTACCGTCCAAAGCTGATAGGTCAGAAACTTGAATGATACATCGCC-GCCGAAG 9015 Query 245 GCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCG-AAGGGCGTTGGTTTT 303 | |||||||| | ||||||||||||||| || | ||| ||| | |||||||| Sbjct 9014 CC---GCGATTCGCAAGTTTATTATGAATCACC---GAWCACCGCAAGCGGTTTGGTTTT 8961 Query 304 TTATCTAATAAATACACCCCTTCCGAAGTCGGGGTTTTTAGCATGTATTAGCTCTAGAAT 363 |||||||| || || ||||| ||| | | ||||||||||| ||| ||| Sbjct 8960 AGGTCTAATAA----ACGCCACCCGAA-----GGTCTCGAACATGTATTAGCCCTACAAT 8910 Query 364 TACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCC 423 || |||||||||||||||| || | || ||||||||||| ||||||| | ||||||||| Sbjct 8909 TAGCACGGTTATCCATGTAAAAACGAAC-ATCAAATAAACTATAACTGTTGTAATGAGCC 8851 Query 424 ATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 483 |||||||||||||| |||| | |||||||||||||||||||||||||||||||||||| Sbjct 8850 ATTCGCAGTTTCACCATATA-AAAGCTTATACTTAGACATGCATGGCTTAATCTTTGAGA 8792 Query 484 CAAGCATATGACTACTGGCAG 504 |||||||||| |||||||||| Sbjct 8791 CAAGCATATG-CTACTGGCAG 8772 >seq11 Length=140388259 Score = 219 bits (242), Expect = 1e-54 Identities = 181/216 (84%), Gaps = 5/216 (2%) Strand=Plus/Minus Query 8 TTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCCCGT 66 ||||||||||| | | ||||| ||||||| ||||| | ||||||||||||||| Sbjct 86496395 TTCCAATTACAGGGTCTTGAAAGAATCCTGTATTGTTATTTTTCGTCACTACCTCCCCGG 86496336 Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 86496335 GTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCATTTCTCAG 86496276 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC-CA 185 |||||||||| ||||||||||||| ||||||| | |||| | | |||| | ||||| || Sbjct 86496275 GCTCCCTCTCTGGAATCGAACCCTGATTCCCCATCACCCATGGTCACCAAGATAGGCACA 86496216 Query 186 CT-ATCCTACCATCGAAAGTTGATAGGGCAGAAATT 220 | || |||||||| ||||||||| || ||| ||| Sbjct 86496215 GTGAT--TACCATCGCAAGTTGATAAGGTAGACATT 86496182 Score = 77.0 bits (84), Expect = 1e-11 Identities = 82/106 (77%), Gaps = 2/106 (2%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTAT-TTATTGTCACTACCT 60 |||||||||||||||| | | ||| | ||||| | ||| || |||||||| ||| Sbjct 46962401 ACTCATTCCAATTACAGGGCATTGAAAAATTCCTGTCTTGTTATATTTTTGTCACTGCCT 46962460 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGG 106 |||| ||| ||| ||||||||||| || |||| |||| ||||||| Sbjct 46962461 CCCCAGGTCAGGAGTGGGTAATTTGTGCACCTGTTGCCATCCTTGG 46962506 Score = 77.0 bits (84), Expect = 1e-11 Identities = 70/87 (80%), Gaps = 5/87 (6%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA-CTTAGACAT 463 |||||||||||||||||| || | ||||||| ||| ||| || | | |||| | Sbjct 76652297 ATAACTGATTTAATGAGCTATCCATAGTTTCATTGTCCAGACTGTGCACAACTTA----T 76652352 Query 464 GCATGGCTTAATCTTTGAGACAAGCAT 490 ||||||||||||||||||||||||||| Sbjct 76652353 GCATGGCTTAATCTTTGAGACAAGCAT 76652379 >seq10354 Length=1096 Score = 185 bits (204), Expect = 3e-44 Identities = 122/134 (91%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 963 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 1022 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1023 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 1082 Query 122 CTCAGGCTCCCTCT 135 |||||||||||||| Sbjct 1083 CTCAGGCTCCCTCT 1096 >seq25 Length=96537449 Score = 183 bits (202), Expect = 9e-44 Identities = 121/133 (91%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 19188010 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 19187951 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 19187950 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 19187891 Query 122 CTCAGGCTCCCTC 134 ||||||||||||| Sbjct 19187890 CTCAGGCTCCCTC 19187878 Score = 143 bits (158), Expect = 8e-32 Identities = 82/84 (98%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 51 GTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 110 ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| Sbjct 19197537 GTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 19197478 Query 111 GGTAGCCGTTTCTCAGGCTCCCTC 134 |||||||||||||||||||||||| Sbjct 19197477 GGTAGCCGTTTCTCAGGCTCCCTC 19197454 >seq20 Length=149338601 Score = 96.9 bits (106), Expect = 1e-17 Identities = 82/100 (82%), Gaps = 1/100 (1%) Strand=Plus/Minus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||||||||| ||||||| ||| || |||||||| || | | | ||| || |||| Sbjct 17717389 ATAACTGATTCAATGAGCTATTAGCTGTTTCACTATACTGGCAGTGTGTACCTACACATA 17717330 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||||||||||||||||||||| |||||||||| Sbjct 17717329 CCTGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 17717291 >seq33 Length=121428352 Score = 95.1 bits (104), Expect = 4e-17 Identities = 118/156 (76%), Gaps = 12/156 (8%) Strand=Plus/Minus Query 356 TCTAGAATTACCACGGTTAT----CCATGTAGTAAGGTA--CTATCAAATAAACGATAAC 409 ||||||||||||| ||||| ||| |||| | || | | |||| || ||||| Sbjct 79797058 TCTAGAATTACCA--GTTATTTAACCAAGTAGAAGAGTGAGCGACCAAAGGAAGCATAAC 79797001 Query 410 TGATTTAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATG 468 ||||||||||||| || | |||||||||||| || || | |||||||||||||| Sbjct 79797000 TGATTTAATGAGCAATCCATAGTTTCACTGTACCAGCCTG--TGCACTTAGACATGCATA 79796943 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||| || || || |||| Sbjct 79796942 ATTTAATCTTTGAGACAAGCATGTG-CTGCTAGCAG 79796908 >seq2 Length=63256308 Score = 95.1 bits (104), Expect = 4e-17 Identities = 89/110 (81%), Gaps = 5/110 (5%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| || | |||||||||||||||||| || ||||||||| |||| | || | | Sbjct 17677045 CAAAGAAGCCATAACTGATTTAATGAGCTGTTTGCAGTTTCATTGTACTG---GCC-ACA 17677100 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||| ||||||||||||||||||||||||||||||| ||||||||| Sbjct 17677101 CTTACTTTTGCATGGCTTAATCTTTGAGACAAGCATATG-TTACTGGCAG 17677149 >seq34 Length=181543317 Score = 91.5 bits (100), Expect = 4e-16 Identities = 88/113 (78%), Gaps = 15/113 (13%) Strand=Plus/Plus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA---CTGTATAGATTGCTT 451 |||| ||| ||| || |||||||||||||| | |||| || ||| | Sbjct 69658485 CAAAGGAACCATAGCTCATTTAATGAGCCATCCACAGTACCAGCCCTG-----------T 69658533 Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 69658534 GTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 69658585 Score = 75.2 bits (82), Expect = 3e-11 Identities = 102/137 (74%), Gaps = 8/137 (6%) Strand=Plus/Minus Query 371 GTTATCCA--TGTAGTAAGGTACT-ATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 || ||||| |||||||| | | | |||| ||| |||||||||||||||||| | Sbjct 5113936 GTAATCCAGCTGTAGTAATCAAGTGACCAAAGGAACCATAACTGATTTAATGAGCTAACT 5113877 Query 428 GCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAG 487 |||||||| || | || || || || | | ||||||||| |||||||||| || || Sbjct 5113876 ACAGTTTCATTGCACTGA--GCATACACATTG--ATGCATGGCCTAATCTTTGACACCAG 5113821 Query 488 CATATGACTACTGGCAG 504 |||||| ||||| ||| Sbjct 5113820 CATATG-TTACTGTCAG 5113805 >seq5 Length=178027732 Score = 91.5 bits (100), Expect = 4e-16 Identities = 71/85 (84%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 ||||| |||| | |||||||||||||||||| | | ||||||||||||||||| Sbjct 48651749 CTGATCCGATGATCTATTCGCAGTTTCACTGTACTGGCCGTGCATACTTAGACATGCATG 48651690 Query 469 GCTTAATCTTTGAGACAAGCATATG 493 |||||||||||||||||||||| || Sbjct 48651689 GCTTAATCTTTGAGACAAGCATTTG 48651665 >seq3 Length=88455658 Score = 89.7 bits (98), Expect = 2e-15 Identities = 92/116 (79%), Gaps = 7/116 (6%) Strand=Plus/Plus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCA--CTGTATAGAT--TG 448 |||||| | | |||||||||||||||||| ||| ||| | | ||| | || || Sbjct 44003330 ATCAAAGGAGCCATAACTGATTTAATGAGCTATTTGCACTGAGATACTGCACAGTCCATG 44003389 Query 449 CTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | ||||||||| ||| |||||||||| ||||||||||||||||| |||||||||| Sbjct 44003390 C--ATACTTAGATATGGATGGCTTAATATTTGAGACAAGCATATG-CTACTGGCAG 44003442 >seq10 Length=55943575 Score = 87.8 bits (96), Expect = 5e-15 Identities = 81/100 (81%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 405 ATAACTG-ATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACAT 463 ||||||| ||||||| ||| |||| ||||||||||||| | | |||||||| || Sbjct 25071904 ATAACTGGATTTAATAAGCTATTCACAGTTTCACTGTACCAACCATGTGTACTTAGATAT 25071845 Query 464 GCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||||||||||||||||| |||||| |||| |||||||| Sbjct 25071844 GCATGGCTTAATCTTTGGGACAAGGGTATG-TTACTGGCA 25071806 >seq15 Length=125274996 Score = 84.2 bits (92), Expect = 7e-14 Identities = 86/112 (77%), Gaps = 3/112 (3%) Strand=Plus/Plus Query 393 ATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTA 452 ||| || ||| || |||||| |||||||||| |||||||||||| || || | Sbjct 11589873 ATCGAAGGAACCGTAGCTGATTCTGTGAGCCATTCACAGTTTCACTGTCCTGACTGTGTG 11589932 Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| ||||||||||||| ||||| |||||||| |||||||||| Sbjct 11589933 CGCTTAGACGTGCATGGCTTAATATTTGAAACAAGCAT---GCTACTGGCAG 11589981 >seq23 Length=109465363 Score = 82.4 bits (90), Expect = 2e-13 Identities = 88/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACCCAAAA-GAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||| ||||| ||| | || || ||| ||||||| | ||| |||||| || Sbjct 17831152 ACTCAATCCAACCACAGGGCCTTGAATGAGTCCTGTATTGTTTTTTTCCATCACTATCTT 17831093 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGC 116 ||| ||| ||| |||||||||||| ||||||||||||||||||||||||||| Sbjct 17831092 CCCTGGTCAGGAGTGGGTAATTTGCAGTCCTGCTGCCTTCCTTGGATGTGGTAGC 17831038 >seq1128 Length=6418 Score = 77.0 bits (84), Expect = 1e-11 Identities = 49/52 (94%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||| |||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 2650 TACTTAAACATGCATGGCTTAATCTTTGAGAGAAGCATAT-ACTACTGGCAG 2700 >seq12 Length=127780087 Score = 77.0 bits (84), Expect = 1e-11 Identities = 79/100 (79%), Gaps = 5/100 (5%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAG--ATTGCTTATACTTAGACA 462 ||| ||||| ||||||||||| | |||||||||||||| | ||| |||| | |||| Sbjct 54140891 ATAGCTGATATAATGAGCCATCCACAGTTTCACTGTATTGGCCATGC--ATACCTGGACA 54140948 Query 463 TGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGC 502 | || |||||| |||| |||||||| |||| ||||||| Sbjct 54140949 TACACGGCTTACTCTTGGAGACAAGTGTATG-TTACTGGC 54140987 >seq9 Length=141945777 Score = 77.0 bits (84), Expect = 1e-11 Identities = 77/99 (78%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 405 ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATG 464 |||| ||||||||||||| || ||||| ||||||| || || | ||| || Sbjct 15548210 ATAAATGATTTAATGAGCTATCTACAGTTACACTGTACCAGCTGTGTACATCCAGATATA 15548269 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCA 503 ||| ||||||||||||||||||||||||| |||||||| Sbjct 15548270 CATAGCTTAATCTTTGAGACAAGCATATG-TTACTGGCA 15548307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510226621184