Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq22 159 6e-37 seq10 78.8 2e-12 >seq22 Length=37440533 Score = 159 bits (176), Expect = 6e-37 Identities = 138/171 (81%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||||||||| | ||||||||||||| ||||| |||||||||||||| ||||| ||||| Sbjct 35900345 TTCTGCTTCACAACGATAGGAAGAGCCTACATCAAAGGATCAAAAAGCGACGTCACTATG 35900286 Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTC 241 |||||||||| ||||||||||||||| |||| |||||||||||||| ||||| || | Sbjct 35900285 AACGCTTGGCCGCCACAAGCCAGTTACCCCTATGGTAACTTTTCTGACACCTTGTGCTTA 35900226 Query 242 AAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 ||| || | | |||||||| ||||| |||||| ||| |||||| Sbjct 35900225 AAACCCAGAAGCTCAGAAGGATCGTGAGGCCCTGCTTTCACGGTCTGTATT 35900175 >seq10 Length=59130967 Score = 78.8 bits (86), Expect = 2e-12 Identities = 117/162 (72%), Gaps = 17/162 (10%) Strand=Plus/Plus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT-TAGTGGGTGAACAATCCAAC 111 ||| ||||||| |||||| || |||| |||| ||| ||||||||||||||| ||| Sbjct 26327257 CTGACTCATGATTGTCTAACCCTGGCTCTCGTT---TATATAGTGGGTGAACAATACAAA 26327313 Query 112 GCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAA 171 |||| ||||||||| || ||||||||| || | | ||| || |||||| | Sbjct 26327314 GCTTGGTGAATTCTGCCTCACAATGATAGGA--AGTCAAGATCAAA----CAAAAA--AT 26327365 Query 172 CGTCGCT-----ATGAACGCTTGGCTGCCACAAGCCAGTTAT 208 |||| | ||||| ||| || ||||||||||||||| Sbjct 26327366 TGTCGATTTAGGATGAAGCCTTAGCCACCACAAGCCAGTTAT 26327407 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854382570240