Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq21 405 2e-110 seq8 396 9e-108 seq5 138 4e-30 seq28 132 2e-28 seq16 125 2e-26 seq31 95.1 4e-17 seq14 89.7 2e-15 seq22 87.8 6e-15 seq11 80.6 9e-13 seq17 77.0 1e-11 seq2 75.2 4e-11 >seq21 Length=39324707 Score = 405 bits (448), Expect = 2e-110 Identities = 268/297 (90%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | | |||||||||||||| | Sbjct 17572504 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGGCTAGAGTCAAGCTCGA 17572445 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||||||| ||| |||||| ||||||||||||| ||||||||||||||||||| ||| | Sbjct 17572444 CAGGGTCTTTTTTACCCGCTAATTCCGCCAAGCCGGTTCCCTTGGCTGTGGTTTGGCTGG 17572385 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||| | ||||||||||||| ||||||||||||||| Sbjct 17572384 ATAGTAGGTAGGGACAGTGGGAATCTCGCTCATCCATTCATGCGTGTCACTAATTAGATG 17572325 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 || ||||||||||||||| ||||||||||||||||||||||||||||||| | |||| Sbjct 17572324 ACAAGGCATTTGGCTACCCTAAGAGAGTCATAGTTACTCCCGCCGTTTACACATGCTTCA 17572265 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| Sbjct 17572264 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGAGTCAACA 17572208 >seq8 Length=64163821 Score = 396 bits (438), Expect = 9e-108 Identities = 276/317 (87%), Gaps = 20/317 (6%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 6351108 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 6351049 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT-------------TGGCT 343 ||||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 6351048 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTAGGCCCGTTCCCTTGGCT 6350989 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 ||||||||||| |||||||| ||||||||||||||||||| || |||||||||||||||| Sbjct 6350988 GTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCATTCATGCGCGT 6350929 Query 404 CACTAATTAGATGACGAGGCATTTGGC-------TACCTTAAGAGAGTCATAGTTACTCC 456 |||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 6350928 GACTAATTAGATGACGAGGCATTTGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 6350869 Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516 ||| |||||||| | ||| |||||||||||||||||||||||||| ||||||||||||| Sbjct 6350868 CGCAGTTTACCCACTCTTCATTGAATTTCTTCACTTTGACATTCAGGGCACTGGGCAGAA 6350809 Query 517 ATCACATTGCGTCAACA 533 |||||||||| |||||| Sbjct 6350808 ATCACATTGCATCAACA 6350792 >seq5 Length=68352097 Score = 138 bits (152), Expect = 4e-30 Identities = 168/223 (75%), Gaps = 7/223 (3%) Strand=Plus/Minus Query 300 GGTCTT-CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||| || |||| |||||||| ||||||| ||| ||||||||||| | || || | | Sbjct 43774511 GGTCTTTCTGTCCCTGCTGATTCTGCCAAGCTGGTTGCCTTGGCTGTG-TGTCACTGGCT 43774453 Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418 | | | || | | | ||| | ||| | |||||||||| || | | || |||||||| Sbjct 43774452 ACTGGGTAAGAATAATGGCAGTCTG--TCATCCATTCATAGGCATTATTATTTAGATGAT 43774395 Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478 || ||||| |||||||| ||||||||| || ||||| | | ||| | || Sbjct 43774394 GAAGCATTCAGCTACCTT--GAGAGTCATTTTTTCTCCCTGTGCTG-CCCTCAGTTCAAA 43774338 Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 |||||||||||||||||||||||| ||||||||||||||||| Sbjct 43774337 CAATTTCTTCACTTTGACATTCAGAACACTGGGCAGAAATCAC 43774295 >seq28 Length=28121958 Score = 132 bits (146), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 10/218 (5%) Strand=Plus/Plus Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359 ||||||||||||| ||||||| |||| ||||||||| || | || ||| |||| Sbjct 15878146 GGTCTTCTTTCCCTATTGATTCC---AAGCAAGTTCCCTTGACTA--GCTTTGCTGGATA 15878200 Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419 | || || ||||||||| ||| | | ||| |||| ||| ||||||| ||| | Sbjct 15878201 GAAGGCAGTGACAGTGGGCCTCTTGATCATCTATTCTTGCATGTCACTAC----ATGGCA 15878256 Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479 ||||||||||||||||||||| | ||||||||||| | |||| | | || || Sbjct 15878257 AGGCATTTGGCTACCTTAAGAACATTATAGTTACTCCAACTCTTTATTCACATTTCACTG 15878316 Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517 ||||||||||||||| ||| |||||| | |||||||| Sbjct 15878317 AATTTCTTCACTTTGCTATTTAGAGCAAT-GGCAGAAA 15878353 >seq16 Length=47638275 Score = 125 bits (138), Expect = 2e-26 Identities = 123/157 (78%), Gaps = 9/157 (6%) Strand=Plus/Plus Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||||||||| ||| || || ||| ||||| |||| ||||||||||| |||||| Sbjct 9423484 AGGGACAGTGGAAATTTCATT----CATACATGCT-GTCATTAATTAGATGAGAAGGCAT 9423538 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||| ||| || |||| | |||||| | |||| ||| ||||| Sbjct 9423539 TTGGCTACCTTAAG----TCACAGCTACTTGTATCATTTACCTGTGCTTTATTGTATTTC 9423594 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 |||||||||| |||||| ||||||| |||| |||||| Sbjct 9423595 TTCACTTTGATATTCAGTGCACTGGTCAGAGATCACA 9423631 >seq31 Length=25890693 Score = 95.1 bits (104), Expect = 4e-17 Identities = 182/266 (68%), Gaps = 23/266 (9%) Strand=Plus/Plus Query 260 AAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 319 ||||| |||||| | | | | ||| |||| |||| | |||||||| |||||| || Sbjct 8631454 AAGTCTTTTCACTATGCCTGGCTATAGTCGTGCTCTATAGGGTCTTTTTTCCCTGCCACG 8631513 Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379 || | ||| || || |||||||||||| || | | || ||||||| Sbjct 8631514 TCTAAAAGGCCTTTTTGCTGGGCTGTGGTTTCACTGG----------GAGAAAGTGGGAT 8631563 Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG-AGGCATTTGGCTACCTTAA 438 ||| ||| |||||| | | | | | |||||||||| | || |||||||||||||||| Sbjct 8631564 TCT-GTTCATCCATGCTTTCATGCTATTAATTAGATGTTGGAGACATTTGGCTACCTTAA 8631622 Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498 || ||||||||||| || | | | | | |||||||||||| | ||| Sbjct 8631623 GATAGTCATAGTTA-----GC-----ATCTGTGTCTCACCAAATTTCTTCACTCTAACA- 8631671 Query 499 TCAGAGCACTGGGCAGAAATCACATT 524 |||||| | | || |||||||||||| Sbjct 8631672 TCAGAGGATTAGGAAGAAATCACATT 8631697 >seq14 Length=53390261 Score = 89.7 bits (98), Expect = 2e-15 Identities = 87/112 (78%), Gaps = 5/112 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | | ||||||||||| |||| Sbjct 16198145 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTTTCTTCAGGACACCTGCTCTATG 16198204 Query 67 -----GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 |||| |||| ||| ||||||||| ||||||||||||||| || |||| Sbjct 16198205 TTACCGTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 16198256 >seq22 Length=37440533 Score = 87.8 bits (96), Expect = 6e-15 Identities = 85/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||| | || |||| ||||||| |||| |||| | ||||||||||||||||| | Sbjct 35900148 CTTCTGCCCCACGGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGCGTCACC 35900089 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 || | |||| ||| ||| ||||| |||||||| |||||| || |||| Sbjct 35900088 GTCTGACAGGTGTACCG-CCCAGTCAAACTCCTCACCTG-CACTGTC 35900044 >seq11 Length=57557976 Score = 80.6 bits (88), Expect = 9e-13 Identities = 92/120 (77%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 463 ||||||||||||| || ||||| ||||||||| | ||| |||| | || | || Sbjct 46484072 CACTAATTAGATGGTGATATATTTG-CTACCTTAATAAGGTCCTAGTCAGATCCACA-TT 46484015 Query 464 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 |||| |||| | |||||||||| ||||||||||||||||| ||||| ||| ||||| Sbjct 46484014 TACCTATGCTTCAGTAAATTTCTTCA-TTTGACATTCAGAGCACAGGGCAAAAAACACAT 46483956 >seq17 Length=44067645 Score = 77.0 bits (84), Expect = 1e-11 Identities = 71/90 (79%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 20 GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGT 79 |||| ||||||| ||| |||| | ||||||||||||||| ||| |||| |||||||| Sbjct 43290602 GGAGGTTTCTGTCTTCCCTGAGCTCACCTTAGGACACCTGCATTACTGTTTGACAGATGT 43290661 Query 80 GCCGCCCCAGCCAAACTCCCCACCTGACAA 109 | |||||| ||||||| || | || ||| Sbjct 43290662 ACGACCCCAGTCAAACTCTCCTCTTGGCAA 43290691 >seq2 Length=87689862 Score = 75.2 bits (82), Expect = 4e-11 Identities = 51/56 (91%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 || |||| ||||||||||||||||||||| ||||||||||||||| || ||||||| Sbjct 70365538 TGTATTT-TTCACTTTGACATTCAGAGCAGTGGGCAGAAATCACAGTGTGTCAACA 70365484 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635166641920