Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01]
2,040 sequences; 1,769,662,895 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq21 405 2e-110
seq8 396 9e-108
seq5 138 4e-30
seq28 132 2e-28
seq16 125 2e-26
seq31 95.1 4e-17
seq14 89.7 2e-15
seq22 87.8 6e-15
seq11 80.6 9e-13
seq17 77.0 1e-11
seq2 75.2 4e-11
>seq21
Length=39324707
Score = 405 bits (448), Expect = 2e-110
Identities = 268/297 (90%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| ||||| | | | |||||||||||||| |
Sbjct 17572504 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGGCTAGAGTCAAGCTCGA 17572445
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356
||||||||| ||| |||||| ||||||||||||| ||||||||||||||||||| ||| |
Sbjct 17572444 CAGGGTCTTTTTTACCCGCTAATTCCGCCAAGCCGGTTCCCTTGGCTGTGGTTTGGCTGG 17572385
Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416
||||||| |||||||||||||||||||| | ||||||||||||| |||||||||||||||
Sbjct 17572384 ATAGTAGGTAGGGACAGTGGGAATCTCGCTCATCCATTCATGCGTGTCACTAATTAGATG 17572325
Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476
|| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||
Sbjct 17572324 ACAAGGCATTTGGCTACCCTAAGAGAGTCATAGTTACTCCCGCCGTTTACACATGCTTCA 17572265
Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 17572264 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGAGTCAACA 17572208
>seq8
Length=64163821
Score = 396 bits (438), Expect = 9e-108
Identities = 276/317 (87%), Gaps = 20/317 (6%)
Strand=Plus/Minus
Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296
|||||||||||||||||||||||| ||| ||||| | | ||||||||||||||||||
Sbjct 6351108 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 6351049
Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCT-------------TGGCT 343
||||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 6351048 CAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCCCGTTCCCTAGGCCCGTTCCCTTGGCT 6350989
Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403
||||||||||| |||||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 6350988 GTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCATTCATCCATTCATGCGCGT 6350929
Query 404 CACTAATTAGATGACGAGGCATTTGGC-------TACCTTAAGAGAGTCATAGTTACTCC 456
|||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 6350928 GACTAATTAGATGACGAGGCATTTGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCC 6350869
Query 457 CGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAA 516
||| |||||||| | ||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 6350868 CGCAGTTTACCCACTCTTCATTGAATTTCTTCACTTTGACATTCAGGGCACTGGGCAGAA 6350809
Query 517 ATCACATTGCGTCAACA 533
|||||||||| ||||||
Sbjct 6350808 ATCACATTGCATCAACA 6350792
>seq5
Length=68352097
Score = 138 bits (152), Expect = 4e-30
Identities = 168/223 (75%), Gaps = 7/223 (3%)
Strand=Plus/Minus
Query 300 GGTCTT-CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358
|||||| || |||| |||||||| ||||||| ||| ||||||||||| | || || | |
Sbjct 43774511 GGTCTTTCTGTCCCTGCTGATTCTGCCAAGCTGGTTGCCTTGGCTGTG-TGTCACTGGCT 43774453
Query 359 AGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGAC 418
| | | || | | | ||| | ||| | |||||||||| || | | || ||||||||
Sbjct 43774452 ACTGGGTAAGAATAATGGCAGTCTG--TCATCCATTCATAGGCATTATTATTTAGATGAT 43774395
Query 419 GAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTT 478
|| ||||| |||||||| ||||||||| || ||||| | | ||| | ||
Sbjct 43774394 GAAGCATTCAGCTACCTT--GAGAGTCATTTTTTCTCCCTGTGCTG-CCCTCAGTTCAAA 43774338
Query 479 GAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521
|||||||||||||||||||||||| |||||||||||||||||
Sbjct 43774337 CAATTTCTTCACTTTGACATTCAGAACACTGGGCAGAAATCAC 43774295
>seq28
Length=28121958
Score = 132 bits (146), Expect = 2e-28
Identities = 162/218 (74%), Gaps = 10/218 (5%)
Strand=Plus/Plus
Query 300 GGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATA 359
||||||||||||| ||||||| |||| ||||||||| || | || ||| ||||
Sbjct 15878146 GGTCTTCTTTCCCTATTGATTCC---AAGCAAGTTCCCTTGACTA--GCTTTGCTGGATA 15878200
Query 360 GTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG 419
| || || ||||||||| ||| | | ||| |||| ||| ||||||| ||| |
Sbjct 15878201 GAAGGCAGTGACAGTGGGCCTCTTGATCATCTATTCTTGCATGTCACTAC----ATGGCA 15878256
Query 420 AGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTG 479
||||||||||||||||||||| | ||||||||||| | |||| | | || ||
Sbjct 15878257 AGGCATTTGGCTACCTTAAGAACATTATAGTTACTCCAACTCTTTATTCACATTTCACTG 15878316
Query 480 AATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAA 517
||||||||||||||| ||| |||||| | ||||||||
Sbjct 15878317 AATTTCTTCACTTTGCTATTTAGAGCAAT-GGCAGAAA 15878353
>seq16
Length=47638275
Score = 125 bits (138), Expect = 2e-26
Identities = 123/157 (78%), Gaps = 9/157 (6%)
Strand=Plus/Plus
Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425
||||||||||| ||| || || ||| ||||| |||| ||||||||||| ||||||
Sbjct 9423484 AGGGACAGTGGAAATTTCATT----CATACATGCT-GTCATTAATTAGATGAGAAGGCAT 9423538
Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485
|||||||||||||| ||| || |||| | |||||| | |||| ||| |||||
Sbjct 9423539 TTGGCTACCTTAAG----TCACAGCTACTTGTATCATTTACCTGTGCTTTATTGTATTTC 9423594
Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522
|||||||||| |||||| ||||||| |||| ||||||
Sbjct 9423595 TTCACTTTGATATTCAGTGCACTGGTCAGAGATCACA 9423631
>seq31
Length=25890693
Score = 95.1 bits (104), Expect = 4e-17
Identities = 182/266 (68%), Gaps = 23/266 (9%)
Strand=Plus/Plus
Query 260 AAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGAT 319
||||| |||||| | | | | ||| |||| |||| | |||||||| |||||| ||
Sbjct 8631454 AAGTCTTTTCACTATGCCTGGCTATAGTCGTGCTCTATAGGGTCTTTTTTCCCTGCCACG 8631513
Query 320 TCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAA 379
|| | ||| || || |||||||||||| || | | || |||||||
Sbjct 8631514 TCTAAAAGGCCTTTTTGCTGGGCTGTGGTTTCACTGG----------GAGAAAGTGGGAT 8631563
Query 380 TCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACG-AGGCATTTGGCTACCTTAA 438
||| ||| |||||| | | | | | |||||||||| | || ||||||||||||||||
Sbjct 8631564 TCT-GTTCATCCATGCTTTCATGCTATTAATTAGATGTTGGAGACATTTGGCTACCTTAA 8631622
Query 439 GAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACAT 498
|| ||||||||||| || | | | | | |||||||||||| | |||
Sbjct 8631623 GATAGTCATAGTTA-----GC-----ATCTGTGTCTCACCAAATTTCTTCACTCTAACA- 8631671
Query 499 TCAGAGCACTGGGCAGAAATCACATT 524
|||||| | | || ||||||||||||
Sbjct 8631672 TCAGAGGATTAGGAAGAAATCACATT 8631697
>seq14
Length=53390261
Score = 89.7 bits (98), Expect = 2e-15
Identities = 87/112 (78%), Gaps = 5/112 (4%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| || |||| ||||||| |||| |||| | | ||||||||||| ||||
Sbjct 16198145 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTTTCTTCAGGACACCTGCTCTATG 16198204
Query 67 -----GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
|||| |||| ||| ||||||||| ||||||||||||||| || ||||
Sbjct 16198205 TTACCGTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC 16198256
>seq22
Length=37440533
Score = 87.8 bits (96), Expect = 6e-15
Identities = 85/107 (79%), Gaps = 2/107 (2%)
Strand=Plus/Minus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||| | || |||| ||||||| |||| |||| | ||||||||||||||||| |
Sbjct 35900148 CTTCTGCCCCACGGGAGGTTTCTGTCCTCCCTGAGCTCACCTTAGGACACCTGCGTCACC 35900089
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113
|| | |||| ||| ||| ||||| |||||||| |||||| || ||||
Sbjct 35900088 GTCTGACAGGTGTACCG-CCCAGTCAAACTCCTCACCTG-CACTGTC 35900044
>seq11
Length=57557976
Score = 80.6 bits (88), Expect = 9e-13
Identities = 92/120 (77%), Gaps = 3/120 (3%)
Strand=Plus/Minus
Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 463
||||||||||||| || ||||| ||||||||| | ||| |||| | || | ||
Sbjct 46484072 CACTAATTAGATGGTGATATATTTG-CTACCTTAATAAGGTCCTAGTCAGATCCACA-TT 46484015
Query 464 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523
|||| |||| | |||||||||| ||||||||||||||||| ||||| ||| |||||
Sbjct 46484014 TACCTATGCTTCAGTAAATTTCTTCA-TTTGACATTCAGAGCACAGGGCAAAAAACACAT 46483956
>seq17
Length=44067645
Score = 77.0 bits (84), Expect = 1e-11
Identities = 71/90 (79%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 20 GGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGT 79
|||| ||||||| ||| |||| | ||||||||||||||| ||| |||| ||||||||
Sbjct 43290602 GGAGGTTTCTGTCTTCCCTGAGCTCACCTTAGGACACCTGCATTACTGTTTGACAGATGT 43290661
Query 80 GCCGCCCCAGCCAAACTCCCCACCTGACAA 109
| |||||| ||||||| || | || |||
Sbjct 43290662 ACGACCCCAGTCAAACTCTCCTCTTGGCAA 43290691
>seq2
Length=87689862
Score = 75.2 bits (82), Expect = 4e-11
Identities = 51/56 (91%), Gaps = 1/56 (2%)
Strand=Plus/Minus
Query 478 TGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533
|| |||| ||||||||||||||||||||| ||||||||||||||| || |||||||
Sbjct 70365538 TGTATTT-TTCACTTTGACATTCAGAGCAGTGGGCAGAAATCACAGTGTGTCAACA 70365484
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635166641920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |