Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Condylura_20cristata_20[refseq_20GCF_5F000260355.1_202012-05-01] 2,040 sequences; 1,769,662,895 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq9 102 6e-17 seq15 89.7 4e-13 >seq9 Length=63840602 Score = 102 bits (112), Expect = 6e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||||||||| || | ||||| || |||||||| ||||| || | Sbjct 25231937 TGGAGCGCTTCAGTCAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTTCAAA 25231996 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 || ||| |||||||| ||||| |||||||||||| | || || || || |||||||| | Sbjct 25231997 TTCTCATCGAGAATGTTCACTCAGAGATGTACAGTTTACTAATAGACACTTACATCAGAG 25232056 Query 61376 A 61376 | Sbjct 25232057 A 25232057 >seq15 Length=51729835 Score = 89.7 bits (98), Expect = 4e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||||||||| || | ||| |||||||| || ||||| || || |||| ||||| || Sbjct 36819525 GGTATACTCTACTACTTCCGTGCACAGGTTGCTGCATTTGATTGTTCCCAGGTTCTGCTG 36819584 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || || || ||||| || | ||| ||||| | |||||| || ||||| || || || Sbjct 36819585 GTTGCTTTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGTGTGCCTGTTTCTGTCTG 36819644 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||||||||| || | ||| || Sbjct 36819645 AGACTCAATGATCGCATACCAGAG 36819668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397558115465600