Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1730 379 4e-103 seq1392 82.4 1e-13 >seq1730 Length=1141449 Score = 379 bits (420), Expect = 4e-103 Identities = 270/305 (89%), Gaps = 6/305 (2%) Strand=Plus/Plus Query 15 GGGCCTTTCCTTCTGGGGATCCGCATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTT 74 |||||||||||||||| | || | |||| ||| | | || || ||||||||| Sbjct 5566 GGGCCTTTCCTTCTGGCTAACCTTGAGTCCTTG--TGGCTCTT--GGCGAACCAGGACTT 5621 Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTCGAATACATTAGCATGGA 133 |||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||| Sbjct 5622 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCGTATTGCTCGAATATATTAGCATGGA 5681 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 5682 ATAATAGAATAGGACGTTTGGTTCTATTTTGTTGGTTTCTAGGACCATCGTAATGATTAA 5741 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 5742 TAGGGACGGTCGGGGGCATCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 5801 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 |||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||| Sbjct 5802 AGACTAACTACTGCGAAAGCATTTGCCAAGGACGTTTTCATTAATCA-AGAACGAAAGTT 5860 Query 314 AGGGG 318 ||||| Sbjct 5861 AGGGG 5865 >seq1392 Length=2567125 Score = 82.4 bits (90), Expect = 1e-13 Identities = 134/188 (71%), Gaps = 10/188 (5%) Strand=Plus/Minus Query 62 GGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---G 117 || ||||| | | ||||||||||||||||||| ||||||||||||||| || | Sbjct 2097254 GGGGCCAGAAGTGTTTACTTTGAAAAAATTAG--TGTTCAAAGCAGGCCCGAGCCACCTG 2097197 Query 118 AATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA 177 |||| | | |||| || || ||||||| | ||||||||||||||||||| | | | Sbjct 2097196 GATACCACAACCAGGAAAAACAGGATAGGACC-GTGGTTCTATTTTGTTGGTTTATGGAA 2097138 Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 | |||||||| |||| || ||||| | |||| | | || ||||||| Sbjct 2097137 GGGAGACCATGATTAAAAGGGGCAGCTGGGGGCATTCATATTGCACT---AGGGGTGAAA 2097081 Query 238 TTCTTGGA 245 |||||||| Sbjct 2097080 TTCTTGGA 2097073 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915180167616