Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1730 300 7e-79 seq1450 116 2e-23 seq1546 98.7 4e-18 >seq1730 Length=1141449 Score = 300 bits (332), Expect = 7e-79 Identities = 384/534 (72%), Gaps = 54/534 (10%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||||| | | ||| ||||||||||||||||||||||||||||| ||||||| ||| ||| Sbjct 7997 TGTGATACACTTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTGAAT 8056 Query 83 TTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGA 142 | | ||||||||||||||||||| |||||||||||||| ||||||| |||| |||||| Sbjct 8057 TCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGA 8116 Query 143 TGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTT 202 |||||||||||||||||||||||||||| || |||||||||||||||||||||| || || Sbjct 8117 TGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGATT 8176 Query 203 GCAACCAGACTTGCCCGCAGTTGCTCAACCGGCCCCTCGGCCGGTGCACTCTTCTGCGGT 262 | | ||| | ||| | ||| || | | | ||| | || Sbjct 8177 GAAGTCAGTCATGCTC----TTG---------------GGACTTACCTCCCTTGAGTGG- 8216 Query 263 CAGGCCAGCATCAGCTCGGGCGGTCGGATAAAGGCCCCGGGAATGTGGCCCCCTTCGGGG 322 || || |||||| | | | |||||||||| | ||||| || || | | ||||| Sbjct 8217 --GGTCAACATCAGTTTTGATCGATGGATAAAGGCACGGGGAAGGTAGCACTC-TCGGGT 8273 Query 323 GGTGTTATAGCCCGGGGT---------------GGAATGCGGCCCGC--CTGGACTGAGG 365 | |||||||| | || ||| || || ||| | | || | | Sbjct 8274 GAACTTATAGCCTCGCGTCATATACATTGATTGGGACTGAGGAACGCAGCATGCCTTATG 8333 Query 366 TCCGCGCTCCGGC------------TAGGATGCTGGCGTAATGGTTGTAAGCGGCCCGTC 413 ||| | | || | ||||||| || | |||||| | ||| || |||||| Sbjct 8334 GCCGGGATTCGTCCACGTACATGCTTAGGATGTTGACATAATGGCTTTAAACGACCCGTC 8393 Query 414 TTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAAACCCGTGCG 473 ||| |||||||||||||||||||||||| | ||||||| ||||||||||||||||| | | Sbjct 8394 TTGAAACACGGACCAAGGAGTCTAACATATCTGCGAGTATTTGGGTGTCAAACCCGAGTG 8453 Query 474 CGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGGTGCACCATCGACCGATC 527 || |||||||||||||| ||| | || || | |||||| | |||||||||| Sbjct 8454 CGCAATGAAAGTGAACGTAGGAGCGATCC--GCAAGGTGCAGCTTCGACCGATC 8505 >seq1450 Length=2195363 Score = 116 bits (128), Expect = 2e-23 Identities = 96/117 (82%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 565 GTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGG 624 ||| ||||| |||||||||||||||||||||| |||| ||||||| |||||||||||| Sbjct 18115 GTTAGGACCTGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAAAGGAAACTCTGG 18174 Query 625 TGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 | ||||| || |||||| ||| ||||||||| | || || | || ||||||| || Sbjct 18175 TAGAGGCCCGTAGCGGTCCTGACGTGCAAATTGGTCATCTGACCTGCGTATAGGAGC 18231 >seq1546 Length=7907336 Score = 98.7 bits (108), Expect = 4e-18 Identities = 105/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 545 ATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT 604 ||| ||| | ||||| | | || | ||| ||||||||||||| ||||||| |||| Sbjct 609693 ATTGGAGCATGAGCACATGTCTTAGAACCAAAAAGATGGTGAACCATGCCTGGGCAGGGC 609752 Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 ||||||| ||||||||||||| |||| | ||| || || |||||||||| || || Sbjct 609753 AAAGCCAGGGGAAACTCTGGTGAAGGCCCATAGCAGTCTTGATGTGCAAATCGGTCATCT 609812 Query 665 AATTTGGGTATAGGGGCGA 683 | |||||||| |||||| Sbjct 609813 GACCTGGGTATAAGGGCGA 609831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079953517850