Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1730 320 3e-85 seq1456 187 4e-45 seq1684 107 3e-21 seq1472 95.1 2e-17 seq1675 93.3 7e-17 seq1640 93.3 7e-17 seq1723 80.6 4e-13 seq1721 73.4 6e-11 >seq1730 Length=1141449 Score = 320 bits (354), Expect = 3e-85 Identities = 206/225 (92%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 34 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGA 93 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | Sbjct 6335 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCAACAGCTAAA 6276 Query 94 AGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTCGATGGGGCTATTTAGCAGG 153 || |||||||||||||||| |||| ||| | | || ||| || |||||||||||| Sbjct 6275 CGCTGTTAGTCCCTCTAAGAAGACAGCGGCCAGCAAAAGCCGACCGGTCTATTTAGCAGG 6216 Query 154 TTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGC 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6215 TTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGC 6156 Query 214 CATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6155 CATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 6111 >seq1456 Length=2170415 Score = 187 bits (206), Expect = 4e-45 Identities = 174/216 (81%), Gaps = 9/216 (4%) Strand=Plus/Minus Query 49 AGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTC 108 ||||||||||||||||||||||| |||| || | |||||| | |||| | ||||||| Sbjct 44766 AGGGCATCACAGACCTGTTATTGT-TCAATCT-CGGGTGGCTGAACGCCACTTGTCCCTC 44709 Query 109 TAAGAAGCCAGC---CACCAACCA-TAGTCGATGGGG---CTATTTAGCAGGTTAAGGTC 161 ||||||| | | || ||| | ||| | | ||| |||||| | || ||| Sbjct 44708 TAAGAAGTTGGGGGACGCCTACCGCTCAGGGATCGTGTAACTAGTTAGCATGCTAGAGTC 44649 Query 162 TCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 221 || ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 44648 TCTTTCATTATGGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACC 44589 Query 222 ACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 |||||||| ||||| |||||||||||||||||||| Sbjct 44588 ACCACCCACGGAATCGAGAAAGAGCTATCAATCTGT 44553 >seq1684 Length=1257347 Score = 107 bits (118), Expect = 3e-21 Identities = 176/245 (72%), Gaps = 24/245 (10%) Strand=Plus/Plus Query 25 CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCA 84 ||||| || |||| || | ||| |||||||||||| | ||||||||| |||| | | Sbjct 42040 CGCGCACGCAGCCCCGACC-TCTCAGGGCATCACAGGCTTGTTATTGC-TCAATCC-CGG 42096 Query 85 TTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-AGCCACCAACCATAGTCGATGGGG-- 141 |||||| ||| | | ||||||||||||| || || || | | ||||| Sbjct 42097 GTGGCTG-AAGACTTT--TCCCTCTAAGAAGTTGAGGGACG---CAGACTGCTTGGGGGG 42150 Query 142 --------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 ||| |||||| | || ||||| || |||||||||||||| |||| || Sbjct 42151 TCACGTAACTAGTTAGCACGCTAGAGTCTCCTTGTTTATCGGAATTAACGGGACAG-TCG 42209 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||||||||||||||| ||| | ||||||| || ||||||||||||||||| |||| Sbjct 42210 CTCCACCAACTAAGAACAGCCCTACACCACC---CACAGAATCAAGAAAGAGCTGTCAAC 42266 Query 254 CTGTC 258 || || Sbjct 42267 CTCTC 42271 >seq1472 Length=2102760 Score = 95.1 bits (104), Expect = 2e-17 Identities = 139/193 (72%), Gaps = 19/193 (10%) Strand=Plus/Plus Query 45 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTC 104 ||||| |||||||||||||||||||||| |||| ||| |||||| | | ||| Sbjct 1293233 TCTAAAGGCATCACAGACCTGTTATTGC-TCAATCTTGG--TGGCTGAAC-----TTGTC 1293284 Query 105 CCTCTAAGAAGCCAGCCA---CCAACCATAGTCGATGGGG------CTATTTAGCAGGTT 155 |||||||| || | ||||| | || | || |||||||||| | Sbjct 1293285 CCTCTAAGGAGTTGGAGGATGCCAAC--TGCTCCAGGGTTGCATAACTATTTAGCATGCC 1293342 Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215 | |||||| | |||| |||||||| ||||||||| |||||||||||||||| |||| Sbjct 1293343 AGGGTCTCCCTAGTTACAGGAATTAAACAGACAAATTGCTCCACCAACTAAGAATAGCCA 1293402 Query 216 TGCACCACCACCC 228 |||| |||||||| Sbjct 1293403 TGCAACACCACCC 1293415 >seq1675 Length=1280423 Score = 93.3 bits (102), Expect = 7e-17 Identities = 171/250 (68%), Gaps = 8/250 (3%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 || ||||||| || ||| || | ||||||||||||| | ||||||||||||| || Sbjct 336287 GTTAGTGTAGTGCC--TGCAAACCGGGACATCTAAGGGCAGCCCAGACCTGTTATTTGCT 336230 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 |||| | |||||| | || | |||||||| ||||| | | | | | Sbjct 336229 TAAACCTTGGGTGGCTGAACAGCACTTGTCCCTCTGAGAAGTTGGAGGATACCTCTGCTT 336170 Query 135 GATGGGGCTAT------TTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACA 188 | || | || |||||| | |||| ||| |||||| ||| || || |||| Sbjct 336169 GGAGGTTCCATAACTACTTAGCATGCCTGAGTCTTGTTTGTTATCAGAACTAGCCCGACA 336110 Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 ||| ||| |||||||||||| ||||| | |||||| || ||| ||||||||||| Sbjct 336109 AATGGCTCTACCAACTAAGAATGGCCACATTCTACCACCTATGGAACAGAGAAAGAGCTA 336050 Query 249 TCAATCTGTC 258 |||| ||||| Sbjct 336049 TCAACCTGTC 336040 >seq1640 Length=1428934 Score = 93.3 bits (102), Expect = 7e-17 Identities = 123/167 (74%), Gaps = 8/167 (5%) Strand=Plus/Plus Query 31 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCT 90 ||| || | ||| | ||||||||||||| ||||||||||||| ||| || | | ||||| Sbjct 359479 TGCAGCTCTGAATGTTTAAGGGCATCACAAACCTGTTATTGCC-CAATCT-CTAGTGGCT 359536 Query 91 GGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA--CCAACCATAGTCG----ATGGGGCTA 144 | | ||| | ||||||||||||| | || ||||||| | | ||| ||| Sbjct 359537 GAATACCACTTATCCCTCTAAGAAGTTGGGCATGCCAACCACTTTGGGGTCATGTAACTA 359596 Query 145 TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 |||||| | | ||||| || |||||| ||||||||||||||||| Sbjct 359597 GTTAGCATGCTGCAGTCTCATTTGTTATCAGAATTAACCAGACAAAT 359643 >seq1723 Length=12986255 Score = 80.6 bits (88), Expect = 4e-13 Identities = 71/89 (80%), Gaps = 10/89 (11%) Strand=Plus/Minus Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 224 || |||||| | | | |||||||||||||||||||||| |||| ||||||| |||||| Sbjct 5773227 TTGGTTATCAGTA--AGCCAGACAAATCACTCCACCAACGCAGAAAGGCCATGTACCACC 5773170 Query 225 ACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||| |||||||||||||||||| Sbjct 5773169 ACC--------CAAGAAAGAGCTATCAAT 5773149 >seq1721 Length=1161334 Score = 73.4 bits (80), Expect = 6e-11 Identities = 82/104 (79%), Gaps = 7/104 (7%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAA-TCACTCCACCAACTAAGAACGGCCATG 217 |||||||| |||| |||| |||||||||| || || |||||||||| | |||||| Sbjct 113634 GTCTCGTT---TATCACAATTCACCAGACAAAATCGCTTCACCAACTAAAACTGGCCATA 113578 Query 218 CACCACC-ACCCATAGAATCAAGAAAGAGCTATCAA-TCTGTCC 259 | ||||| ||||| ||| | |||||||||||||| |||||| Sbjct 113577 CCCCACCCACCCACGCAATGA-GAAAGAGCTATCAACCCTGTCC 113535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796783272927