Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1450 334 1e-89 seq1556 212 1e-52 seq1342 168 1e-39 seq1895 100 5e-19 seq1413 75.2 2e-11 >seq1450 Length=2195363 Score = 334 bits (370), Expect = 1e-89 Identities = 232/263 (88%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| ||||||||||||||| ||| ||| ||||||||||||||||||||||||||||| Sbjct 20686 TCATCAATAGGGTAAAACTAACTTGTTTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 20627 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 20626 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 20567 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 20566 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 20507 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | || | |||||||| ||| Sbjct 20506 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCAAAGGTCAGAAGGATCGTGAGG 20447 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 20446 CCCCGCTTTCACGGTCTGTATTC 20424 >seq1556 Length=1722230 Score = 212 bits (234), Expect = 1e-52 Identities = 191/240 (80%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||| |||| || |||||||||| ||| || ||||||| ||||||||| | ||||| || Sbjct 523589 ATCAGGAGGGAAACACTAACCTGTTTCACGAGGGTCTAATCCCAGCTCATGCTCCCTGTT 523530 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | | ||||||||||||||||| |||||||| ||| | ||||||||||||||||| Sbjct 523529 GGCAGATGAACAATCCAACGCTTGGTGAATTCTGTTTCACAACGATAGGAAGAGCCGACA 523470 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 | |||||||||||||| || ||||||||| |||||||||||||||||| ||||||| Sbjct 523469 TTGAAGGATCAAAAAGTGACACTGCTATGAACATTTGGCTGCCACAAGCCAGCTATCCCT 523410 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||| ||||| || ||| || | ||| | || | |||||||| ||||| Sbjct 523409 GTGGTAACTCTTCTGACATCTCCTGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCC 523350 >seq1342 Length=2960168 Score = 168 bits (186), Expect = 1e-39 Identities = 194/260 (75%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||| |||||||||| ||| ||||||||||| |||| |||||||||| ||| | | Sbjct 1149663 TCATCAGTGGGGTAAAACTGCCCTATCTCATGACGGCCTAATCCCAGCTCACATTCTC-A 1149605 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||| ||||| || ||| ||| |||||||| |||| |||||| | Sbjct 1149604 CTAGTGGGTGGTCAATCTGACACTTGATGAAGTCTGCTTCACAATGA-----AGAGCCAA 1149550 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 | | ||||| |||||| | || ||||||||| |||||| | || |||||||||| Sbjct 1149549 TAGCTAAGGACTAAAAAGAAGAGTTGCTATGAACACTTGGCCATCCCATTCCAGTTATCC 1149490 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||| ||||||||||| ||||||| || | | || || | | | |||||| | ||| Sbjct 1149489 CTGTGATAACTTTTCTGACACCTCTTGCTTAAGATGTCAAAGATCAGAAGGATGGCGAGG 1149430 Query 271 CCACACTTTCATGGTTTGTA 290 || |||||| || |||| Sbjct 1149429 CCCTGCTTTCACAGTCTGTA 1149410 >seq1895 Length=716815 Score = 100 bits (110), Expect = 5e-19 Identities = 192/284 (68%), Gaps = 37/284 (13%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTT------ 85 ||||| ||| ||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 81149 CATCATTAGAGTAAAACCAACCTGTCTCATGAAGGTCTAAACCCAGCTCATGTTGAGTGA 81090 Query 86 --------------CCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC- 130 | || |||||| |||||| |||||| | | ||||||| |||| Sbjct 81089 AGATCTAAACCCAGCTCTGTTAGTGAGTGAACCATCCAATGATAGGTGAATTCTCCTTCA 81030 Query 131 --GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188 || || || ||| |||||| ||||| ||||||| | | || |||| |||| Sbjct 81029 CAGGAATAGCAGAAAG---TGACATC-AAGGACCAAAAAGTGAGAT--CTCTGAATGCTT 80976 Query 189 GGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC 248 ||| ||| ||||||| | |||||||||||||| |||||| || | ||| | Sbjct 80975 GGCCGCCCAAAGCCAG-------TATGGTAACTTTTCTGACACCTCCTGCTTGAAA-CTA 80924 Query 249 GAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | || || | | | | ||||| |||||| ||| |||||| Sbjct 80923 AAAAGATTAGAAGGTTGGGAGGCCCTGCTTTCAGGGTCTGTATT 80880 >seq1413 Length=8511369 Score = 75.2 bits (82), Expect = 2e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 ||||| | ||| ||||||||||||| || || || || | || ||||||||| | Sbjct 4555224 AAGAGACTACACTGAAGGATCAAAAATGAATGTTTCTCTGCTTGGTTATCTGCCACAAAC 4555165 Query 202 CAGTTATCCCTGTGGTAACTTTTCTG 227 | |||||||||||||||||||||||| Sbjct 4555164 CGGTTATCCCTGTGGTAACTTTTCTG 4555139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854381485152