Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1730 165 2e-38 seq1064 75.2 2e-11 >seq1730 Length=1141449 Score = 165 bits (182), Expect = 2e-38 Identities = 97/101 (96%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 228 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 287 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6943 GTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCG 7002 Query 288 CGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 | ||||||||| ||||||||||||||||||||||||||| Sbjct 7003 CAAGTCATCAGCTTGCGTTGATTACGTCCCTGCCCTTTGTA 7043 Score = 161 bits (178), Expect = 2e-37 Identities = 117/134 (87%), Gaps = 1/134 (1%) Strand=Plus/Plus Query 20 GAGCGAGACCTTAACCTGCTAAATAGCCAGGCCCGCTTTGGCGGGTCGCCGGCTTCTTAG 79 || ||||||||||||||||||||||| | || | ||||| || || ||| | |||||||| Sbjct 6202 GAACGAGACCTTAACCTGCTAAATAGACCGGTCGGCTTTTGCTGGCCGCTGTCTTCTTAG 6261 Query 80 AGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 138 |||||||| | || | ||| | ||||||||||||||||||||||||||||||||||||| Sbjct 6262 AGGGACTAACAGCGTTTAGCTGTTGGAAGTTTGAGGCAATAACAGGTCTGTGATGCCCTT 6321 Query 139 AGATGTTCTGGGCC 152 |||||||||||||| Sbjct 6322 AGATGTTCTGGGCC 6335 >seq1064 Length=3651634 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | |||||||||||| ||| | || ||||||| | |||||| || Sbjct 1242578 TCGTGATGGGGATCAGGGATTGCAATTATTCCTCATGAAAGAGGAATTTCCAGTAAGTGC 1242637 Query 289 GTGTCATCAGCACGCGTTGATTACG-TCCCTGCCCTTTGTA 328 ||| | ||| || ||||||| | |||||||||||||| Sbjct 1242638 AGGTCGTAAGCTTGCATTGATTAAGCCCCCTGCCCTTTGTA 1242678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947179474176