Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1450 517 4e-144 seq445 286 1e-74 seq1378 248 3e-63 seq1979 233 6e-59 seq2045 179 1e-42 seq1895 179 1e-42 seq1442 159 1e-36 seq1414 86.0 2e-14 >seq1450 Length=2195363 Score = 517 bits (572), Expect = 4e-144 Identities = 445/545 (82%), Gaps = 18/545 (3%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 20390 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 20331 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| | ||| || Sbjct 20330 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTCCCCGGAGCGGGTC 20271 Query 127 G-GCCCGC-------GAAGGAC-CTTAACGCCAGAAA--ATGGTCGGTGAAGACCAGTTC 175 | ||||| | || | ||| |||||||| | | | | | | | | Sbjct 20270 GTGCCCGGCGGCTGGGCCGGGCGCTTGGCGCCAGAAGCGAGAGCCCCTTGGGGCTCGCCC 20211 Query 176 CGCT--TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGA 231 | | ||| | ||| |||||||||| || |||||||||||||||| ||| ||| Sbjct 20210 CCCACCTCACCCGGTCAGTGAAAAAACGATCAGAGTAGTGGTATTTCACTGGCGGCCCGC 20151 Query 232 AACGG---CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTC 288 || || || ||||||||||||||||||||| ||| ||||| | | | |||||||||| Sbjct 20150 AAGGGGGCCTTCCACTTATTCTACACCTCTCATGTCCCTTCACCATGCCAGACTAGAGTC 20091 Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 20090 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTGCCTTGGCTGTGGT 20031 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 |||||| |||| ||| ||||||||||||||||||| || ||||||||||||||||||||| Sbjct 20030 TTCGCTGGATAATAGGTAGGGACAGTGGGAATCTCCTTCATCCATTCATGCGCGTCACTA 19971 Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 |||||||||||| |||||||||||||||||||||||||||| |||||||||| | ||| | Sbjct 19970 ATTAGATGACGAAGCATTTGGCTACCTTAAGAGAGTCATAGGTACTCCCGCCATCTACTC 19911 Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGT 528 |||||| ||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 19910 GCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCACTT 19851 Query 529 CAACA 533 ||||| Sbjct 19850 CAACA 19846 >seq445 Length=9959088 Score = 286 bits (316), Expect = 1e-74 Identities = 241/297 (81%), Gaps = 12/297 (4%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| || ||||| ||||| ||||||| | ||||| | | |||||||||||||||| | Sbjct 9022785 CTCTCATTTATTATACACTTCTCAAGGCTCTTCACTGTGCCAGACTAGAGTCAAGCTCTA 9022726 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || |||||| ||||||| |||||||| ||||||| ||||||||| |||| |||| ||| | Sbjct 9022725 CAAGGTCTTATTTCCCCACTGATTCCACCAAGCCTGTTCCCTTGACTGTAGTTTTGCTGG 9022666 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||| |||| | |||||||||| ||| || |||||| | | |||||||||||||| Sbjct 9022665 GTAGTAGGTAGGAATTGTGGGAATCTTGTTTATTCATTCACGTGTATCACTAATTAGATG 9022606 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||||||||| ||||||| ||||||||||||||| || |||||| Sbjct 9022605 ATGAGGCATTTGG---CCTTAAGGTGGTCATAGTTACTCCCACCATTTACC--------- 9022558 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||| Sbjct 9022557 TTGAATTTCTTCACTTTGACTTTCAGAGCACTAGGCAGAAATCATATTGCATCAACA 9022501 >seq1378 Length=2674132 Score = 248 bits (274), Expect = 3e-63 Identities = 164/182 (90%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 336 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTC 395 ||||||||||||||| ||| |||||||| |||||||||||||||||| ||| |||||||| Sbjct 2235457 CCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCTTGTTCATCCATTC 2235516 Query 396 ATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC 455 |||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 2235517 ATGCGCATCACTACTTAGATGACGAGGCATTTGGCTACCTCGAGAGAGTCATAGTTACTC 2235576 Query 456 CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGA 515 ||||| ||| |||||||| ||||||||| |||||||||||||||||| |||||||| Sbjct 2235577 CCGCCATTTGCCCGCGCTCCACTGAATTTCTGTACTTTGACATTCAGAGCAGTGGGCAGA 2235636 Query 516 AA 517 || Sbjct 2235637 AA 2235638 >seq1979 Length=6093679 Score = 233 bits (258), Expect = 6e-59 Identities = 194/233 (83%), Gaps = 7/233 (3%) Strand=Plus/Minus Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 ||||||||| |||||| |||| |||||||| || |||| ||| |||||||||| | Sbjct 1358300 AAGCTCAACCAGGTCTT---TCCCTGCTGATTCTGCAAAGCTAGTTGTCTTGGCTGTG-T 1358245 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 ||| |||| || ||| ||||||| ||||||||| ||| |||||||||| || ||| || Sbjct 1358244 TTCACTAGTTACTAGGTAGGGACCTTGGGAATCTTGTTCATCCATTCATAAGCATCATTA 1358185 Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 |||||||| |||||||||||||||||| ||||||||||||||||||| | |||||| Sbjct 1358184 TTTAGATGATGAGGCATTTGGCTACCTT--GAGAGTCATAGTTACTCCCTGTG-TTACCC 1358128 Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 | ||| ||||||||||||||| ||||||||||||| ||||||||||||||| Sbjct 1358127 TCACTTCATTGAATTTCTTCACTATGACATTCAGAGCGCTGGGCAGAAATCAC 1358075 >seq2045 Length=5931235 Score = 179 bits (198), Expect = 1e-42 Identities = 215/288 (75%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGACTAGAGTCAAGCTCA 295 |||||||||| |||||||||| | | ||||| | | | || || | ||||| || Sbjct 1116483 CTCCCACTTAATCTACACCTCCTGTGCCTCTTCACCATGCCAGGTTTACAATCAAGTGCA 1116542 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||| ||||||| ||| | |||| ||| |||| |||| ||||| |||| | Sbjct 1116543 GCAGAGTCTTCTCGGCCCACAGATTTTGCCCAGCCATCACCCT-GGCTGCAGTTTTATCA 1116601 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||| ||| || |||| ||||| || || || ||||||||| ||| |||| ||||| Sbjct 1116602 AATAATAGGTAAAGACAACAGGAATATCATTCATTCATTCATGCATGTCCCTAACTAGAT 1116661 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGCGCTT 474 | ||||||||||||||||||||||||||||| ||||| ||| | | |||| | | || Sbjct 1116662 GGTGAGGCATTTGGCTACCTTAAGAGAGTCATGGTTACACCCATCAATCTACCTGGGTTT 1116721 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 | |||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1116722 CAGTAAATTTCTTCACTTTGACATTCAGAGCACTGGGCAAAAATAACA 1116769 >seq1895 Length=716815 Score = 179 bits (198), Expect = 1e-42 Identities = 221/297 (74%), Gaps = 20/297 (7%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| |||||||||||||| ||||| || ||||| | ||||||||||| |||||| Sbjct 80711 CTCTCACTTATTCTACACTTCTCA-GTATCTTCACTGTCACAGACTAGAGTCATGCTCAA 80653 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT--CCCTTGGCTGTGGTTTCGCT 354 |||||| |||||| |||||||| ||| | | || ||||| || || ||||| || Sbjct 80652 CAGGGTTTTCTTTGTAAGCTGATTCTCTCAAACTCATTGCCCCTTAGCCGTAGTTTCACT 80593 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 || || |||| |||||| ||| || ||||||||| ||| ||||||||| Sbjct 80592 AG------------GATAGTGAGAATCTTGTTCATTCATTCATGCATGTCTCTAATTAGA 80545 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 || | |||||||| ||||||||||| ||| || ||||| | ||| |||||| || || Sbjct 80544 TGGTGGGGCATTTGTCTACCTTAAGACAGT--TAATTACT-CTGCCATTTACCTGC-TTT 80489 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||| ||| ||| || |||||| | |||||||| ||||||||||||| | |||| Sbjct 80488 CATTGAGTTT-TTCTCTCTGACATAGAAAGCACTGGACAGAAATCACATTACATCAA 80433 >seq1442 Length=2240416 Score = 159 bits (176), Expect = 1e-36 Identities = 121/143 (85%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 |||||| | |||||||||||| ||| ||||| | | || |||||||||||||||| Sbjct 574090 CCCACTCGTCCTACACCTCTCATGTCTCTTCACCGTGCCAGAACAGAGTCAAGCTCAACA 574031 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||||||| |||||||||| ||||| |||| |||||||||||||| |||||| ||| Sbjct 574030 GGGTCTTCTTTCTCCGCTGATTCTGCCAAACCCGCTCCCTTGGCTGTGGGTTCGCTGGAT 573971 Query 359 AGTAGATAGGGACAGTGGGAATC 381 |||| ||| ||||||||||||| Sbjct 573970 AGTACGTAGCGACAGTGGGAATC 573948 >seq1414 Length=2414291 Score = 86.0 bits (94), Expect = 2e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 ||| ||||||||| ||||| || |||||||| ||||||||||||||||||| |||||||| Sbjct 1146248 TTCTCTTGGCTGTAGTTTCTCTGGATAGTAGGTAGGGACAGTGGGAATCTCATTAATCCA 1146307 Query 393 TT 394 || Sbjct 1146308 TT 1146309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635164565216