Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq1730 733 0.0 seq1684 127 6e-27 seq1392 120 9e-25 seq1723 96.9 1e-17 seq1387 84.2 7e-14 seq1715 82.4 2e-13 >seq1730 Length=1141449 Score = 733 bits (812), Expect = 0.0 Identities = 471/508 (93%), Gaps = 6/508 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||||||||||||||||| || | |||||||||| |||||||||||||||||| Sbjct 5397 GTACTCATTCCAATTACAAGACCCGAATGGGCCCTGTATCGTTATTTATTGTCACTACCT 5338 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5337 CCCTGAATTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 5278 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 5277 TCTCAGGCTCCCTCTCCGGAATCGAACCCTTATTCCCCGTTACCCGTTGAAACCATGGTA 5218 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 5217 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCAGCA 5158 Query 241 CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAGGGCGTTGGT 300 ||||||||||||||||| |||||||||||||||| ||| ||| ||||| | | ||| | Sbjct 5157 CAAGGCCATGCGATTCGAAAAGTTATTATGAATCATCAAAGAG-TCCGAA-GACATTGAT 5100 Query 301 TTTTTATCTAATAAATACACCCCTTCCGAA--GTCGGGGTTTTTAGCATGTATTAGCTCT 358 ||||||||||||||||||| | ||||| || |||| | |||| |||||||||||||||| Sbjct 5099 TTTTTATCTAATAAATACATCTCTTCCAAAGGGTCGAGATTTTAAGCATGTATTAGCTCT 5040 Query 359 AGAATTACCACGGTTAT-CCATGTAGT-AAGGTACTATCAAATAAACGATAACTGATTTA 416 ||||||||||| ||||| ||||||||| |||| ||||||||||||||||||||||||||| Sbjct 5039 AGAATTACCACAGTTATACCATGTAGTAAAGGAACTATCAAATAAACGATAACTGATTTA 4980 Query 417 ATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATGGCTTAATC 476 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 4979 ATGAGCCATTCGCAGTTTCACTGTATAAATTGCTTATACTTAGACATGCATGGCTTAATC 4920 Query 477 TTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||| Sbjct 4919 TTTGAGACAAGCATATGACTACTGGCAG 4892 >seq1684 Length=1257347 Score = 127 bits (140), Expect = 6e-27 Identities = 129/167 (77%), Gaps = 1/167 (1%) Strand=Plus/Plus Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 || |||| ||||||||||||| | ||||| ||||||||||| ||||| |||| |||| Sbjct 42771 GTGGGGAGTGGGTAATTTGCGTACTCACTGCCATCCTTGGATGTAGTAGCTGTTTTTCAG 42830 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186 |||||||| | ||||| ||||||| ||||||| | |||| || | |||||||||| Sbjct 42831 GCTCCCTCCCAGGAATTGAACCCTGATTCCCCATCACCC-CTGGTCACATGGTAGGCATG 42889 Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATC 233 || ||||||| ||| |||| | |||| |||||| ||| |||| Sbjct 42890 GTAACTGCCATCGAGAGTCGATAAGACAGATATTTGACTGAGTCATC 42936 Score = 122 bits (134), Expect = 3e-25 Identities = 122/157 (78%), Gaps = 1/157 (1%) Strand=Plus/Minus Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 || |||| ||||||||||||| | ||||| ||||||||||| ||||| |||| |||| Sbjct 43135 GTGGGGAGTGGGTAATTTGCGTACTCACTGCCATCCTTGGATGTAGTAGCTGTTTTTCAG 43076 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186 |||||||| | ||||| ||||||| ||||||| | |||| || | |||||||||| Sbjct 43075 GCTCCCTCCCAGGAATTGAACCCTGATTCCCCATCACCC-CTGGTCACATGGTAGGCATG 43017 Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGA 223 || ||||||| ||| |||| | |||| |||||| Sbjct 43016 GTAACTGCCATCGAGAGTCGATAAGACAGATATTTGA 42980 >seq1392 Length=2567125 Score = 120 bits (132), Expect = 9e-25 Identities = 141/187 (75%), Gaps = 14/187 (7%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACA-AGACCCAAAA--GAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||| || | ||||| ||||||||||| ||||| | |||| ||| Sbjct 2097477 ACTCATTCCAATTACACAGTCTCAAAAAAGAGCCCTGTATTGTTATTTTTCTTCACCACC 2097536 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | ||| | | || |||||||||||| |||||||||||||||| |||||| || Sbjct 2097537 TTCCCCTCA-GAGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTTGATGTG------GT 2097589 Query 120 TTCTCAGGCTCCCTCTCCGGAATC----GAACCCTAATTCCCCGTTACCCGTTGATACCA 175 ||||||||||||| ||| || | ||||||| |||||| || |||| | |||| Sbjct 2097590 TTCTCAGGCTCCCACTCGAGACCCAGGTGAACCCTGATTCCCTGTAACCCACGGTCACCA 2097649 Query 176 TGGTAGG 182 ||| ||| Sbjct 2097650 TGGCAGG 2097656 >seq1723 Length=12986255 Score = 96.9 bits (106), Expect = 1e-17 Identities = 123/167 (74%), Gaps = 8/167 (5%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||| |||||||||||| |||| | |||||| || || | | ||| | |||||| | Sbjct 5772431 ACTTATTCCAATTACAGGACCTCGAAAGAGTCCAGTGT---TGTTTTTCGTCACTGCTCT 5772375 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | |||| || ||||||||||||| |||||||||||||||| || ||||| | || Sbjct 5772374 CCTGGGTCGCGAGCAGGTAATTTGCGCGACTGCTGCCTTCCTTGGTTGGGGTAGTTGATT 5772315 Query 122 CTCAGGCTCCCTCTCCGGAATCGA----ACCCTAATTCCCCGTTACC 164 | |||||||| | |||| ||| |||| ||||||| | ||| Sbjct 5772314 ATGAGGCTCCCGCCGTGGAACCGAACACACCCAGATTCCCCATCACC 5772268 >seq1387 Length=2580631 Score = 84.2 bits (92), Expect = 7e-14 Identities = 89/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGAC-CCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||| ||||| ||| | |||||| ||||||| ||||| ||||||||| || Sbjct 1785860 TACTCATTCCAGTTACAGGACACTGAAAGAGTCCTGTATTGTTATTTTTTGTCACTATCT 1785919 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 |||| ||| ||| ||||| ||||| | || |||||| | ||||| || ||| Sbjct 1785920 CCCCAGGTCAGGAGTGGGT--TTTGCACACCAGCTGCCATTGTTGGACATGATAG 1785972 >seq1715 Length=1177036 Score = 82.4 bits (90), Expect = 2e-13 Identities = 80/105 (76%), Gaps = 15/105 (14%) Strand=Plus/Plus Query 400 AAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAG 459 |||| ||||||||| ||||||||||||| ||||||||| ||| || || Sbjct 126179 AAACCATAACTGATATAATGAGCCATTCACAGTTTCACGGTACTGAATG----------- 126227 Query 460 ACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 | |||| |||||||||| ||||||||||||| |||||||||| Sbjct 126228 ---TTCATGACTTAATCTTTAAGACAAGCATATG-CTACTGGCAG 126268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510367269632