Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20asinus_20[refseq_20GCF_5F001305755.1_202015-10-02] 2,167 sequences; 2,391,051,217 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1020 107 2e-18 seq3 104 2e-17 >seq1020 Length=3688603 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 |||||| || || ||||| ||||| ||||| ||||| || || |||| ||||| || Sbjct 997960 GGTATATTCTACTATTTCTGTGCATAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 998019 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 |||||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 998020 GTTACTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 998079 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||||||||||| | ||| || Sbjct 998080 AGACTCAATGATGGCATACCACAG 998103 >seq3 Length=5570360 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| |||||||| ||| ||| |||||| Sbjct 3103042 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTCCAAATTCTCATCGAGAAT 3103101 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 3103102 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 3103148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397557500104880