Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq9622 244 2e-62 seq9333 244 2e-62 seq9327 244 2e-62 seq8552 244 2e-62 seq8365 244 2e-62 seq1 237 3e-60 seq4 181 2e-43 seq8571 167 4e-39 seq10 107 3e-21 seq3 100 5e-19 seq13 96.9 6e-18 seq9 87.8 3e-15 seq21 75.2 2e-11 >seq9622 Length=5338 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 4993 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 4935 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 4934 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 4876 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 4875 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 4816 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 4815 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 4756 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 4755 ATCAATCTGTC 4745 >seq9333 Length=6233 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 5777 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 5719 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 5718 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 5660 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 5659 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 5600 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 5599 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 5540 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 5539 ATCAATCTGTC 5529 >seq9327 Length=6181 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 5865 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 5807 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 5806 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 5748 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 5747 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 5688 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 5687 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 5628 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 5627 ATCAATCTGTC 5617 >seq8552 Length=41063 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 27486 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 27544 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 27545 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 27603 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 27604 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 27663 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 27664 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 27723 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 27724 ATCAATCTGTC 27734 >seq8365 Length=226949 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 25740 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 25798 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 25799 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 25857 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 25858 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 25917 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 25918 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 25977 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 25978 ATCAATCTGTC 25988 >seq1 Length=185838109 Score = 237 bits (262), Expect = 3e-60 Identities = 208/255 (82%), Gaps = 17/255 (7%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 89075823 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 89075881 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATA 131 || ||| | ||||| | |||| | |||||||||||||| | |||| || | Sbjct 89075882 CAGTCTTGGGT-GGCTGAATGCCACTTGTCCCTCTAAGAAGTTGGGGGACACCGAC--TG 89075938 Query 132 GTCGATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACC 183 ||| |||| ||| |||||| | | ||||||||||||||||||||||||| Sbjct 89075939 CTCG--GGGGTTGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACC 89075996 Query 184 AGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAG 243 ||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||| Sbjct 89075997 AGACAAATCGTTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAG 89076056 Query 244 AGCTATCAATCTGTC 258 |||||||||||| || Sbjct 89076057 AGCTATCAATCTATC 89076071 >seq4 Length=108569075 Score = 181 bits (200), Expect = 2e-43 Identities = 174/217 (80%), Gaps = 11/217 (5%) Strand=Plus/Minus Query 49 AGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTC 108 ||||||||||||||||||||||| |||| ||| | ||||| | ||| | ||||||| Sbjct 40913292 AGGGCATCACAGACCTGTTATTGT-TCAATCTTGGGT-GGCTGAACGCCGCTTGTCCCTC 40913235 Query 109 TAAGAAGCCAGC---CACCAAC--CATAGTCGATGGGG---CTATTTAGCAGGTTAAGGT 160 ||||||| | | || || | || ||| | | ||| |||||| | || || Sbjct 40913234 TAAGAAGTTGGGGGACGCCTACGGCTCAGG-GATCGCGTAACTAGTTAGCATGCTAGAGT 40913176 Query 161 CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCAC 220 ||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 40913175 CTCTTTCGTTATGGGAATTAACCAGACAAATCACTCCACCAGCTAAGAACGGCCATGCAC 40913116 Query 221 CACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||||||| ||||| |||||||||||||||||||| Sbjct 40913115 CACCACCCACGGAATCGAGAAAGAGCTATCAATCTGT 40913079 >seq8571 Length=16777 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 6244 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 6185 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| Sbjct 6184 ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTC 6128 >seq10 Length=83980604 Score = 107 bits (118), Expect = 3e-21 Identities = 176/245 (72%), Gaps = 24/245 (10%) Strand=Plus/Plus Query 25 CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCA 84 ||||| || |||| || | ||| |||||||||||| | ||||||||| |||| | | Sbjct 26934086 CGCGCACGCAGCCCCGACC-TCTCAGGGCATCACAGGCTTGTTATTGC-TCAATCC-CGG 26934142 Query 85 TTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-AGCCACCAACCATAGTCGATGGGG-- 141 |||||| ||| | | ||||||||||||| || || || | | ||||| Sbjct 26934143 GTGGCTG-AAGACTTT--TCCCTCTAAGAAGTTGAGGGACG---CAGACTGCTTGGGGGG 26934196 Query 142 --------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 ||| |||||| | || ||||| || |||||||||||||| |||| || Sbjct 26934197 TCACGTAACTAGTTAGCACGCTAGAGTCTCCTTGTTTATCGGAATTAACGGGACAG-TCG 26934255 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||||||||||||||| ||| | ||||||| || ||||||||||||||||| |||| Sbjct 26934256 CTCCACCAACTAAGAACAGCCCTACACCACC---CACAGAATCAAGAAAGAGCTGTCAAC 26934312 Query 254 CTGTC 258 || || Sbjct 26934313 CTCTC 26934317 Score = 73.4 bits (80), Expect = 6e-11 Identities = 82/104 (79%), Gaps = 7/104 (7%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAA-TCACTCCACCAACTAAGAACGGCCATG 217 |||||||| |||| |||| |||||||||| || || |||||||||| | |||||| Sbjct 26389440 GTCTCGTT---TATCACAATTCACCAGACAAAATCGCTTCACCAACTAAAACTGGCCATA 26389496 Query 218 CACCACC-ACCCATAGAATCAAGAAAGAGCTATCAA-TCTGTCC 259 | ||||| ||||| ||| | |||||||||||||| |||||| Sbjct 26389497 CCCCACCCACCCACGCAATGA-GAAAGAGCTATCAACCCTGTCC 26389539 >seq3 Length=119479920 Score = 100 bits (110), Expect = 5e-19 Identities = 175/252 (69%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 || ||||||| || ||| || | ||||||||||||| | ||||||||||||| || Sbjct 41197782 GTTAGTGTAGTGCC--TGCAAACCGGGACATCTAAGGGCAGCCCAGACCTGTTATTTGCT 41197839 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC---ACCAACCATA 131 |||| | |||||| | || | |||||||| ||||| | |||| | Sbjct 41197840 TAAACCTTGGGTGGCTGAACAGCACTTGTCCCTCTGAGAAGTTGGAGGATACCACTGCTT 41197899 Query 132 G-----TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | || || ||| |||||| | |||| ||| |||||| ||| || || || Sbjct 41197900 GGAGGTTCCATAA--CTAGTTAGCATGCCTGAGTCTTGTTTGTTATCAGAACTAGCCCGA 41197957 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||| ||| |||||||||||| ||||| | | |||||| || ||| ||||||||| Sbjct 41197958 CAAATGGCTCTACCAACTAAGAATGGCCACACTCTACCACCTATGGAACAGAGAAAGAGC 41198017 Query 247 TATCAATCTGTC 258 |||||| ||||| Sbjct 41198018 TATCAACCTGTC 41198029 >seq13 Length=42578167 Score = 96.9 bits (106), Expect = 6e-18 Identities = 124/167 (74%), Gaps = 8/167 (5%) Strand=Plus/Plus Query 31 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCT 90 ||| || | ||| | ||||||||||||| ||||||||||||| ||| || | | ||||| Sbjct 19505340 TGCAGCTCTGAATGTTTAAGGGCATCACAAACCTGTTATTGCC-CAATCT-CTAGTGGCT 19505397 Query 91 GGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA--CCAACCATAGTCG----ATGGGGCTA 144 ||| ||| | ||||||||||||| | || ||||||| | | ||| ||| Sbjct 19505398 GGATACCACTTATCCCTCTAAGAAGTTGGGCATGCCAACCACTTTGGGGTCATGTAACTA 19505457 Query 145 TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 |||||| | | ||||| || |||||| ||||||||||||||||| Sbjct 19505458 GTTAGCATGCTGCAGTCTCATTTGTTATCAGAATTAACCAGACAAAT 19505504 >seq9 Length=83561422 Score = 87.8 bits (96), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 19/191 (10%) Strand=Plus/Plus Query 45 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTC 104 ||||| ||||||| |||||||||||||| |||| ||| |||||| | | ||| Sbjct 64155811 TCTAAAGGCATCATAGACCTGTTATTGC-TCAATCTTGG--TGGCTGAAC-----TTGTC 64155862 Query 105 CCTCTAAGAAGCCAGCCA---CCAACCATAGTCGATGGGG------CTATTTAGCAGGTT 155 |||||||| || | ||||| | || | || ||| |||||| | Sbjct 64155863 CCTCTAAGGAGTTGGAGGATGCCAAC--TGCTCCAGGGTTGCATAACTAGTTAGCATGCC 64155920 Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215 | |||||| | |||| |||||||| ||||||||| ||||||||||||||||| |||| Sbjct 64155921 AGGGTCTCCCTAGTTACAGGAATTAAACAGACAAATTGCTCCACCAACTAAGAACAGCCA 64155980 Query 216 TGCACCACCAC 226 |||| |||||| Sbjct 64155981 TGCAACACCAC 64155991 >seq21 Length=57723302 Score = 75.2 bits (82), Expect = 2e-11 Identities = 70/89 (79%), Gaps = 10/89 (11%) Strand=Plus/Plus Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 224 || |||||| | | | ||||||||||||||||||||| |||| ||||||| |||||| Sbjct 49294113 TTGGTTATCAGTA--AGCCAGACAAATCACTCCACCAATGCAGAAAGGCCATGTACCACC 49294170 Query 225 ACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||| |||||||||||||||||| Sbjct 49294171 ACC--------CAAGAAAGAGCTATCAAT 49294191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796725611997