Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq8365 351 2e-94 seq1 331 2e-88 seq3 324 2e-86 seq10 199 7e-49 seq2 168 1e-39 seq15 95.1 2e-17 seq16 75.2 2e-11 >seq8365 Length=226949 Score = 351 bits (388), Expect = 2e-94 Identities = 255/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 48414 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 48473 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 48474 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 48533 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 48534 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 48593 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 48594 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 48653 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 48654 TAAAACCCCAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 48707 Score = 343 bits (380), Expect = 3e-92 Identities = 254/294 (86%), Gaps = 2/294 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 226576 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 226635 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 226636 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 226695 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 226696 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 226755 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 226756 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 226815 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACAC-TTTCATGGTTTGTATT 292 | ||| | | || | |||||||| ||||| | | ||||| ||| |||||| Sbjct 226816 TAAAACCCCAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTTCACGGTCTGTATT 226869 >seq1 Length=185838109 Score = 331 bits (366), Expect = 2e-88 Identities = 231/263 (88%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||| Sbjct 89070973 TCATCAATAGGGTAAAACTAACTTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTA 89071032 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 89071033 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 89071092 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 89071093 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 89071152 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | || | |||||||| ||| Sbjct 89071153 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCTAAGGTCAGAAGGATCGTGAGG 89071212 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| || ||||||| Sbjct 89071213 CCCCGCTTTCACCGTCTGTATTC 89071235 >seq3 Length=119479920 Score = 324 bits (358), Expect = 2e-86 Identities = 249/294 (85%), Gaps = 1/294 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||| ||||||||||||||||||||| Sbjct 36417458 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGCAGGGTAAAACTAACCTGTCTC 36417517 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 36417518 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTGGGTG 36417577 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| ||||||| |||||||||||||||||| ||||||||| || ||||| Sbjct 36417578 AATTCTGCTTCACAATGATAGAAAGAGCCGACATCGAAGGGTCAAAAAGCGACAGCGCTA 36417637 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 36417638 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 36417697 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 36417698 TAAAAGCCCAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 36417751 >seq10 Length=83980604 Score = 199 bits (220), Expect = 7e-49 Identities = 188/240 (78%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||| |||| || |||||||| | ||| || ||||||| |||||||| | ||||| || Sbjct 55126407 ATCAGGAGGGAAACACTAACCTATTTCACGAGGGTCTAATGCCAGCTCATGCTCCCTGTT 55126466 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | | ||||||||||||| ||| |||||||| ||| | ||||||||||||||||| Sbjct 55126467 GGCAGATGAACAATCCAACACTTGGTGAATTCTGTTTCACAACGATAGGAAGAGCCGACA 55126526 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 | |||||||||||||| || ||||||||| |||||||||||||||||| ||||||| Sbjct 55126527 TTGAAGGATCAAAAAGTGACACTGCTATGAACATTTGGCTGCCACAAGCCAGCTATCCCT 55126586 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||| ||||| || ||| || | ||| | || | |||||||| ||||| Sbjct 55126587 GTGGTAACTCTTCTGACATCTCCCGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCC 55126646 >seq2 Length=120857687 Score = 168 bits (186), Expect = 1e-39 Identities = 194/260 (75%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||| |||||||||| ||| ||||||||||| |||| |||||||||| ||| | | Sbjct 96558770 TCATCAGTGGGGTAAAACTGCCCTATCTCATGACGGCCTAATCCCAGCTCACATTCTC-A 96558828 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||| ||||| || ||| ||| |||||||| |||| |||||| | Sbjct 96558829 CTAGTGGGTGGTCAATCTGACACTTGATGAAGTCTGCTTCACAATGA-----AGAGCCAA 96558883 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 | | ||||| |||||| | || ||||||||| |||||| | || |||||||||| Sbjct 96558884 TAGCTAAGGACTAAAAAGAAGAGTTGCTATGAACACTTGGCCATCCCATTCCAGTTATCC 96558943 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||| ||||||||||| ||||||| || | | || || | | | |||||| | ||| Sbjct 96558944 CTGTGATAACTTTTCTGACACCTCTTGCTTAAGATGTCAAAGATCAGAAGGATGGCGAGG 96559003 Query 271 CCACACTTTCATGGTTTGTA 290 || |||||| || |||| Sbjct 96559004 CCCTGCTTTCACAGTCTGTA 96559023 >seq15 Length=91571448 Score = 95.1 bits (104), Expect = 2e-17 Identities = 191/284 (67%), Gaps = 37/284 (13%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTT------ 85 ||||| ||| ||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 1195479 CATCATTAGAGTAAAACCAACCTGTCTCATGAAGGTCTAAACCCAGCTCATGTTGAGTGA 1195420 Query 86 --------------CCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC- 130 | || |||||| |||||| |||||| | | ||||||| |||| Sbjct 1195419 AGATCTAAACCCAGCTCTGTTAGTGAGTGAACCATCCAATGATAGGTGAATTCTCCTTCA 1195360 Query 131 --GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188 || || || ||| |||||| ||||| ||||||| | | | |||| |||| Sbjct 1195359 CAGGAATAGCAGAAAG---TGACATC-AAGGACCAAAAAGTGAGAT--TTCTGAATGCTT 1195306 Query 189 GGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC 248 ||| ||| ||||||| | |||||||||||||| |||||| || | ||| | Sbjct 1195305 GGCCGCCCAAAGCCAG-------TATGGTAACTTTTCTGACACCTCCTGCTTGAAA-CTA 1195254 Query 249 GAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | || || | | | | ||||| |||||| ||| |||||| Sbjct 1195253 AAAAGATTAGAAGGTTGGGAGGCCCTGCTTTCAGGGTCTGTATT 1195210 >seq16 Length=87365405 Score = 75.2 bits (82), Expect = 2e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 ||||| | ||| ||||||||||||| || || || || | || ||||||||| | Sbjct 76106806 AAGAGACTACACTGAAGGATCAAAAATGAATGTTTCTCTGCTTGGTTATCTGCCACAAAC 76106747 Query 202 CAGTTATCCCTGTGGTAACTTTTCTG 227 | |||||||||||||||||||||||| Sbjct 76106746 CGGTTATCCCTGTGGTAACTTTTCTG 76106721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854317661472