Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1 488 2e-135 seq8365 473 4e-131 seq15 311 3e-82 seq4 241 4e-61 seq2 239 1e-60 seq3 156 1e-35 >seq1 Length=185838109 Score = 488 bits (540), Expect = 2e-135 Identities = 440/546 (81%), Gaps = 19/546 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 89071269 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 89071328 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||| ||| || |||| | ||| || Sbjct 89071329 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCATCTGGCACTGTCCCCGGAGCGGGTC 89071388 Query 127 ------GGC--CCGCGAAGGAC-CTTAACGCCAGAAA--ATGGTCGGTGAAGACCAGTTC 175 ||| ||| | || | ||| |||||||| | | | | | | | | Sbjct 89071389 TTGCCCGGCGGCCGGGCCGGGCGCTTGGCGCCAGAAGCGAGAGCCCCTTGGGGCTCGCCC 89071448 Query 176 CGCT--TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGA 231 | | ||| | ||| ||||| |||| || ||||||||||||||| ||| ||| Sbjct 89071449 CCCACCTCACCCGGTCAGTGAAAAAGCGATCAGAGTAGTGGTATTTCACCGGCGGCCCGC 89071508 Query 232 AACGG---CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTC 288 || || || |||||| |||||||||||||| ||| ||||| | | | |||||||||| Sbjct 89071509 AAGGGGGCCTTCCACTTGTTCTACACCTCTCATGTCTCTTCACCATGCCAGACTAGAGTC 89071568 Query 289 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGT 348 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 89071569 AAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTGCCTTGGCTGTGGT 89071628 Query 349 TTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTA 408 |||||| |||| || ||||||||||||||||||| || ||||||||||||||||||||| Sbjct 89071629 TTCGCTGGATAACAGTTAGGGACAGTGGGAATCTCCTTCATCCATTCATGCGCGTCACTA 89071688 Query 409 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCC 468 ||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||| | Sbjct 89071689 ATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGGTACTCCCGCCATCTACTC 89071748 Query 469 GCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACT-GGGCAGAAATCACATTGCG 527 |||||| |||| ||||||||||||||||||||||||||| ||||||||||||||| | Sbjct 89071749 GCGCTTCATTGACTTTCTTCACTTTGACATTCAGAGCACTGGGGCAGAAATCACATCACT 89071808 Query 528 TCAACA 533 |||||| Sbjct 89071809 TCAACA 89071814 Score = 185 bits (204), Expect = 3e-44 Identities = 216/288 (75%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGACTAGAGTCAAGCTCA 295 |||||||||| |||||||||| | | ||||| | | | || || | ||||| || Sbjct 49295978 CTCCCACTTAATCTACACCTCCTGTGCCTCTTCACCATGCCAGGTTTACAATCAAGTGCA 49296037 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||| ||||||| ||| | |||| ||| |||| | ||| |||||| |||| | Sbjct 49296038 GCAGAGTCTTCTCGGCCCACAGATTTTGCCCAGCCA-TCCCCCTGGCTGCAGTTTTATCA 49296096 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||| ||| || |||| ||||| || || || ||||||||| ||| |||| ||||| Sbjct 49296097 AATAATAGGTAAAGACAACAGGAATATCATTCATTCATTCATGCATGTCCCTAACTAGAT 49296156 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGCGCTT 474 | ||||||||||||||||||||||||||||| ||||| ||| | | |||| | | || Sbjct 49296157 GGTGAGGCATTTGGCTACCTTAAGAGAGTCATGGTTACACCCATCAATCTACCTGGGTTT 49296216 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 | |||||||||||||||||||||||||||||||||| |||| ||| Sbjct 49296217 CAGTAAATTTCTTCACTTTGACATTCAGAGCACTGGGCAAAAATAACA 49296264 >seq8365 Length=226949 Score = 473 bits (524), Expect = 4e-131 Identities = 283/297 (95%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 49054 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 49113 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 49114 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 49173 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 49174 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 49233 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 49234 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 49293 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 49294 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCAACA 49350 Score = 118 bits (130), Expect = 3e-24 Identities = 103/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 48741 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 48800 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| |||||| | Sbjct 48801 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCGGAGC 48855 Query 127 GGCCCGCG 134 || |||| Sbjct 48856 GGGTCGCG 48863 >seq15 Length=91571448 Score = 311 bits (344), Expect = 3e-82 Identities = 247/297 (83%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| || ||||| ||||| ||||||| | ||||| | | |||||||||||||||| | Sbjct 38288842 CTCTCATTTATTATACACTTCTCAAGGCTCTTCACTGTGCCAGACTAGAGTCAAGCTCTA 38288783 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || |||||| ||||||| |||||||| ||||||| ||||||||| |||| |||| ||| | Sbjct 38288782 CAAGGTCTTATTTCCCCACTGATTCCACCAAGCCTGTTCCCTTGACTGTAGTTTTGCTGG 38288723 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||| |||| | |||||||||| ||| || |||||| | |||||||||||||| Sbjct 38288722 GTAGTAGGTAGGAATTGTGGGAATCTTGTTTATTCATTCACATGTATCACTAATTAGATG 38288663 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||||||||||||||||||| ||||||||||||||| || |||||| | |||| Sbjct 38288662 ATGAGGCATTTGGCTACCTTAAGGTGGTCATAGTTACTCCCACCATTTACCTGTGCTTCA 38288603 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||| |||||| ||||||||||| ||||||||||| ||||| |||||| Sbjct 38288602 TTGAATTTCTTCATTTTGACTTTCAGAGCACTAGGCAGAAATCATATTGCATCAACA 38288546 Score = 176 bits (194), Expect = 1e-41 Identities = 220/297 (74%), Gaps = 20/297 (7%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| |||||||||||||| ||||| || ||||| | ||||||||||| |||||| Sbjct 1195040 CTCTCACTTATTCTACACTTCTCA-GTATCTTCACTGTCACAGACTAGAGTCATGCTCAA 1194982 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT--CCCTTGGCTGTGGTTTCGCT 354 ||||||| ||||| |||||||| ||| | | || ||||| || || ||||| || Sbjct 1194981 CAGGGTCGTCTTTGTAAGCTGATTCTCTCAAACTCATTGCCCCTTAGCCGTAGTTTCACT 1194922 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 || || |||| |||||| ||| || | ||||||| ||| ||||||||| Sbjct 1194921 AG------------GATAGTGAGAATCTTGTTCATTCGTTCATGCATGTCTCTAATTAGA 1194874 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 || | |||||||| ||||||||||| ||| || ||||| | ||| |||||| || || Sbjct 1194873 TGGTGGGGCATTTGTCTACCTTAAGACAGT--TAATTACT-CTGCCATTTACCTGC-TTT 1194818 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||| ||| ||| || |||||| | |||||||| ||||||||||||| | |||| Sbjct 1194817 CATTGAGTTT-TTCTCTCTGACATAGAAAGCACTGGACAGAAATCACATTACATCAA 1194762 >seq4 Length=108569075 Score = 241 bits (266), Expect = 4e-61 Identities = 198/237 (84%), Gaps = 7/237 (3%) Strand=Plus/Minus Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 ||| ||||||||| |||||| |||| |||||||| || |||| ||| |||||||| Sbjct 5395670 AGTTAAGCTCAACCAGGTCTT---TCCCTGCTGATTCTGCAAAGCTAGTTGTCTTGGCTG 5395614 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 || |||| |||| || ||| ||||||| ||||||||| ||| |||||||||| || || Sbjct 5395613 TG-TTTCACTAGTTACTAGGTAGGGACCTTGGGAATCTTGTTCATCCATTCATAAGCATC 5395555 Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 | || |||||||| |||||||||||||||||| ||||||||||||||||||| | || Sbjct 5395554 ATTATTTAGATGATGAGGCATTTGGCTACCTT--GAGAGTCATAGTTACTCCCTGTG-TT 5395498 Query 465 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 |||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 5395497 ACCCTCACTTCATTGAATTTCTTCACTATGACATTCAGAGCACTGGGCAGAAATCAC 5395441 >seq2 Length=120857687 Score = 239 bits (264), Expect = 1e-60 Identities = 162/182 (89%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 336 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTC 395 ||||||||||||||| ||| |||||||| ||||||||||||||||| ||| |||||||| Sbjct 41401857 CCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCGTGTTCATCCATTC 41401916 Query 396 ATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC 455 |||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 41401917 ATGCGCATCACTACTTAGATGACGAGGCATTTGGCTACCTCGAGAGAGTCATAGTTACTC 41401976 Query 456 CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGA 515 ||||| ||| |||| ||| ||||||||| |||||||||||||||||| |||||||| Sbjct 41401977 CCGCCATTTGCCCGTGCTCCACTGAATTTCTGTACTTTGACATTCAGAGCAGTGGGCAGA 41402036 Query 516 AA 517 || Sbjct 41402037 AA 41402038 Score = 86.0 bits (94), Expect = 2e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 ||| ||||||||| ||||| || |||||||| ||||||||||||||||||| |||||||| Sbjct 58613603 TTCTCTTGGCTGTAGTTTCTCTGGATAGTAGGTAGGGACAGTGGGAATCTCATTAATCCA 58613662 Query 393 TT 394 || Sbjct 58613663 TT 58613664 >seq3 Length=119479920 Score = 156 bits (172), Expect = 1e-35 Identities = 122/146 (84%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 || |||||| | |||||||||||| ||| ||||| | | || ||||||||||||| Sbjct 79249454 GCCCCCACTCGTCCTACACCTCTCATGTCTCTTCACCGTGCCAGAACAGAGTCAAGCTCA 79249513 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||| |||||||||| ||||| |||| ||||| |||||||| |||||| Sbjct 79249514 ACAGGGTCTTCTTTCTCCGCTGATTCTGCCAAACCCGCTCCCTCGGCTGTGGGTTCGCTG 79249573 Query 356 GATAGTAGATAGGGACAGTGGGAATC 381 ||||||| ||| ||||||||||||| Sbjct 79249574 GATAGTACGTAGCGACAGTGGGAATC 79249599 Score = 118 bits (130), Expect = 3e-24 Identities = 103/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 36417785 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 36417844 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| ||| || | Sbjct 36417845 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCAGAGC 36417899 Query 127 GGCCCGCG 134 ||| |||| Sbjct 36417900 GGCTCGCG 36417907 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635042415776