Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20caballus_20[refseq_20GCF_5F000002305.2_202007-10-29] 9,637 sequences; 2,474,929,062 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7 111 1e-19 seq9 104 2e-17 >seq7 Length=98542428 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 |||||| || || ||||| ||||| ||||| ||||| || || |||| ||||| || Sbjct 72040410 GGTATATTCTACTATTTCTGTGCATAGATTGCTGCATTTGATCGTTCCCAGGTTCTGCTG 72040351 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 |||||||| ||||| || | ||| ||||| | ||||||||| || || ||||| || Sbjct 72040350 GTTACTCTTCCGATTACAGGAATCTTTGTAGAGCATGTACGGGGTACCTGTCTCTGTCTG 72040291 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 ||||||||||||||| | ||| || Sbjct 72040290 GGACTCAATGATGGCATACCACAG 72040267 >seq9 Length=83561422 Score = 104 bits (114), Expect = 2e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 61270 CAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAAT 61329 ||||||||||| || | ||||| || |||||||| |||||||| ||| ||| |||||| Sbjct 47800923 CAGGAGGTGCAGGTTCCAGAGGCTCGCTGTTTCTATGGCTTCCAAATTCTCATCGAGAAT 47800864 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA 61376 || ||||| |||||||||||| | || || || || |||||||| || Sbjct 47800863 GTTCACTCAGAGATGTACAGTTTGCTAATAGACACTTACATCAGAGA 47800817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397521305265680