Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq7165 174 2e-41 seq9384 122 1e-25 seq1784 73.4 6e-11 >seq7165 Length=42025 Score = 174 bits (192), Expect = 2e-41 Identities = 182/234 (78%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 17334 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 17277 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 17276 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 17217 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||| |||| ||| | || || ||| |||||||||||||||||| Sbjct 17216 ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 17157 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 17156 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 17104 >seq9384 Length=14792 Score = 122 bits (134), Expect = 1e-25 Identities = 174/236 (74%), Gaps = 12/236 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| ||||| ||||| ||| |||||| |||||| | Sbjct 46 GTACAAAGGGCAGGGACTTA----ACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 99 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 ||| || | | || |||||||| | ||||||||||||| ||||| | | Sbjct 100 CTCATTCATGGGGAATAATTGCAACCCCCGATCCCCATCACGAATGGGGTTCAACGGGTG 159 Query 121 CCCGGAC--CTGTCGGC-CAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 | |||| ||| ||| | |||| || | ||| ||||||||||||||||| Sbjct 160 AC-GGACGCCTGCAGGCGCTGGGTGGGC-ACACCCTGAGCCAGTCAGTGTAGCGCGCGTG 217 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 218 CAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 272 >seq1784 Length=378188 Score = 73.4 bits (80), Expect = 6e-11 Identities = 81/104 (78%), Gaps = 3/104 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGA-CGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTT 59 ||||||||||||||| | || |||| || ||||| ||||| || |||||| |||| || Sbjct 145258 GTACAAAGGGCAGGGGGCTTAATCAATGCAAGCTT-ATGACCTGCACTTACT-GGAAATT 145201 Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 |||| || | || || ||||||||| ||||||||||||| Sbjct 145200 CCTCTTTCATGAGGAATAATTGCAATCCCTGATCCCCATCACGA 145157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751613188355