Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq7165 174 3e-41 seq9384 161 2e-37 seq1319 82.4 1e-13 >seq7165 Length=42025 Score = 174 bits (192), Expect = 3e-41 Identities = 208/278 (75%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 16401 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 16460 Query 98 TCAAAGCAGGCCTTTGCTC---GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 16461 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGACC-GCGG 16519 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 16520 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 16579 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | |||||||| Sbjct 16580 GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA 16639 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 || ||||| |||||||||||||||| |||||||||| Sbjct 16640 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 16676 >seq9384 Length=14792 Score = 161 bits (178), Expect = 2e-37 Identities = 209/284 (74%), Gaps = 6/284 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | |||||||||||||||||||||||| Sbjct 1018 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCAAAGCGTTTACTTTGAAAAAATTAGAGTGT 959 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 958 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGG 900 Query 155 TTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCA 214 ||||||||||||||||| | || | | |||||||| ||||| | |||||| | Sbjct 899 TTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATTC 840 Query 215 GTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCG 274 ||||| | |||||||||||||||||| ||||| || | | ||||| Sbjct 839 GTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAACAAAAGCA 780 Query 275 TTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| |||||||||||||||| |||||||||| || || Sbjct 779 TTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTCAGAGG 737 >seq1319 Length=481703 Score = 82.4 bits (90), Expect = 1e-13 Identities = 134/188 (71%), Gaps = 10/188 (5%) Strand=Plus/Minus Query 62 GGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC---G 117 || ||||| | | ||||||||||||||||||| ||||||||||||||| || | Sbjct 212133 GGGGCCAGAAGTGTTTACTTTGAAAAAATTAG--TGTTCAAAGCAGGCCCGAGCCACCTG 212076 Query 118 AATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA 177 |||| | | |||| || || ||||||| | ||||||||||||||||||| | | | Sbjct 212075 GATACCACAACCAGGAAAAACAGGATAGGACC-GTGGTTCTATTTTGTTGGTTTATGGAA 212017 Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 | |||||||| |||| || ||||| | |||| | | || ||||||| Sbjct 212016 GGGAGACCATGATTAAAAGGGGCAGCTGGGGGCATTCATATTGCACT---AGGGGTGAAA 211960 Query 238 TTCTTGGA 245 |||||||| Sbjct 211959 TTCTTGGA 211952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914714056256