Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq7165 145 3e-32 seq9836 123 1e-25 seq1639 93.3 2e-16 >seq7165 Length=42025 Score = 145 bits (160), Expect = 3e-32 Identities = 104/120 (87%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 564 TGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTG 623 |||| ||||||||||||||| |||||||||||| |||| ||||||||||||||||||| Sbjct 22418 TGTTAGGACCCGAAAGATGGGGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTG 22477 Query 624 GTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||||| || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 22478 GTGGAGGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 22537 >seq9836 Length=11799 Score = 123 bits (136), Expect = 1e-25 Identities = 128/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 32 CCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAA 91 ||||| |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| Sbjct 8834 CCTTCCCGGAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAA 8775 Query 92 AGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCA 151 |||||||| ||| ||||||||||| ||||||| || | ||||| ||||||| | Sbjct 8774 GGCTAAATACCGGCACGAGACCGATAGTCAACAAGTACCGTAAGGGAAAGTTGAAAAGAA 8715 Query 152 CTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 ||||| | |||||||| || || ||||||| ||| | ||| || || Sbjct 8714 CTTTGAAGAGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 8667 >seq1639 Length=405927 Score = 93.3 bits (102), Expect = 2e-16 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 555 GAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAG 614 ||||| | | || | ||| ||||||||||||| ||||||| |||| ||||||| | Sbjct 316414 GAGCACATGTCTTAGAACCAAAAAGATGGTGAACCATGCCTGGGCAGGGCAAAGCCAGGG 316473 Query 615 GAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTA 674 |||||||||||| |||| | ||| || || | ||||||||| || || | |||||| Sbjct 316474 GAAACTCTGGTGAAGGCCCATAGCAGTCTTGACATGCAAATCGGTCATCTGACCTGGGTA 316533 Query 675 TAGGGGCGA 683 || |||||| Sbjct 316534 TAAGGGCGA 316542 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078861069350