Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq7165 244 2e-62 seq6097 181 2e-43 seq9384 179 6e-43 seq20433 107 3e-21 seq348 100 5e-19 seq203 96.9 6e-18 seq284 87.8 3e-15 seq860 75.2 2e-11 seq853 73.4 6e-11 >seq7165 Length=42025 Score = 244 bits (270), Expect = 2e-62 Identities = 208/251 (83%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 17176 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 17118 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCA-T 130 ||| || | |||||| | |||| | |||||||||||||| | | || ||| | Sbjct 17117 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCT 17059 Query 131 AGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||| |||||| | | ||||||||||||||||||||||||||||| Sbjct 17058 CGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGAC 16999 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 16998 AAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCT 16939 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 16938 ATCAATCTGTC 16928 >seq6097 Length=66431 Score = 181 bits (200), Expect = 2e-43 Identities = 174/217 (80%), Gaps = 11/217 (5%) Strand=Plus/Plus Query 49 AGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTC 108 ||||||||||||||||||||||| |||| ||| | ||||| | ||| | ||||||| Sbjct 38014 AGGGCATCACAGACCTGTTATTGT-TCAATCTTGGGT-GGCTGAACGCCGCTTGTCCCTC 38071 Query 109 TAAGAAGCCAGC---CACCAAC--CATAGTCGATGGGG---CTATTTAGCAGGTTAAGGT 160 ||||||| | | || || | || ||| | | ||| |||||| | || || Sbjct 38072 TAAGAAGTTGGGGGACGCCTACGGCTCAGG-GATCGCGTAACTAGTTAGCATGCTAGAGT 38130 Query 161 CTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCAC 220 ||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 38131 CTCTTTCGTTATGGGAATTAACCAGACAAATCACTCCACCAGCTAAGAACGGCCATGCAC 38190 Query 221 CACCACCCATAGAATCAAGAAAGAGCTATCAATCTGT 257 ||||||||| ||||| |||||||||||||||||||| Sbjct 38191 CACCACCCACGGAATCGAGAAAGAGCTATCAATCTGT 38227 >seq9384 Length=14792 Score = 179 bits (198), Expect = 6e-43 Identities = 214/296 (72%), Gaps = 56/296 (19%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC-- 72 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 200 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGCTC 259 Query 73 ------------CTCAA----ACTT--CCAT---------------------TGGCTGGA 93 || || |||| || | |||||| | Sbjct 260 AATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGTCTTGGGTGGCTGAA 319 Query 94 AGCCAATAGTCCCTCTAAGAAGCCAGC---CACCAACCATAGTCGATGGGG--------C 142 |||| | |||||||||||||| | |||| || | ||| |||| | Sbjct 320 TGCCACTTGTCCCTCTAAGAAGTTGGGGGACACCGAC--TGCTCG--GGGGTTGCGTAAC 375 Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 || |||||| | | |||||||||||||||||||||||||||||||||| ||||||||| Sbjct 376 TAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCAA 435 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||| |||||| |||||||||||||||||| || Sbjct 436 CTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTATC 491 >seq20433 Length=1608 Score = 107 bits (118), Expect = 3e-21 Identities = 176/245 (72%), Gaps = 24/245 (10%) Strand=Plus/Plus Query 25 CGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCA 84 ||||| || |||| || | ||| |||||||||||| | ||||||||| |||| | | Sbjct 604 CGCGCACGCAGCCCCGACC-TCTCAGGGCATCACAGGCTTGTTATTGC-TCAATCC-CGG 660 Query 85 TTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCC-AGCCACCAACCATAGTCGATGGGG-- 141 |||||| ||| | | ||||||||||||| || || || | | ||||| Sbjct 661 GTGGCTG-AAGACTTT--TCCCTCTAAGAAGTTGAGGGACG---CAGACTGCTTGGGGGG 714 Query 142 --------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA 193 ||| |||||| | || ||||| || |||||||||||||| |||| || Sbjct 715 TCACGTAACTAGTTAGCACGCTAGAGTCTCCTTGTTTATCGGAATTAACGGGACAG-TCG 773 Query 194 CTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||||||||||||||||| ||| | ||||||| || ||||||||||||||||| |||| Sbjct 774 CTCCACCAACTAAGAACAGCCCTACACCACC---CACAGAATCAAGAAAGAGCTGTCAAC 830 Query 254 CTGTC 258 || || Sbjct 831 CTCTC 835 >seq348 Length=1053823 Score = 100 bits (110), Expect = 5e-19 Identities = 175/252 (69%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 || ||||||| || ||| || | ||||||||||||| | ||||||||||||| || Sbjct 50310 GTTAGTGTAGTGCC--TGCAAACCGGGACATCTAAGGGCAGCCCAGACCTGTTATTTGCT 50367 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC---ACCAACCATA 131 |||| | |||||| | || | |||||||| ||||| | |||| | Sbjct 50368 TAAACCTTGGGTGGCTGAACAGCACTTGTCCCTCTGAGAAGTTGGAGGATACCACTGCTT 50427 Query 132 G-----TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | || || ||| |||||| | |||| ||| |||||| ||| || || || Sbjct 50428 GGAGGTTCCATAA--CTAGTTAGCATGCCTGAGTCTTGTTTGTTATCAGAACTAGCCCGA 50485 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||| ||| |||||||||||| ||||| | | |||||| || ||| ||||||||| Sbjct 50486 CAAATGGCTCTACCAACTAAGAATGGCCACACTCTACCACCTATGGAACAGAGAAAGAGC 50545 Query 247 TATCAATCTGTC 258 |||||| ||||| Sbjct 50546 TATCAACCTGTC 50557 >seq203 Length=1332455 Score = 96.9 bits (106), Expect = 6e-18 Identities = 124/167 (74%), Gaps = 8/167 (5%) Strand=Plus/Minus Query 31 TGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCT 90 ||| || | ||| | ||||||||||||| ||||||||||||| ||| || | | ||||| Sbjct 212220 TGCAGCTCTGAATGTTTAAGGGCATCACAAACCTGTTATTGCC-CAATCT-CTAGTGGCT 212163 Query 91 GGAAGCCAATAGTCCCTCTAAGAAGCCAGCCA--CCAACCATAGTCG----ATGGGGCTA 144 ||| ||| | ||||||||||||| | || ||||||| | | ||| ||| Sbjct 212162 GGATACCACTTATCCCTCTAAGAAGTTGGGCATGCCAACCACTTTGGGGTCATGTAACTA 212103 Query 145 TTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAAT 191 |||||| | | ||||| || |||||| ||||||||||||||||| Sbjct 212102 GTTAGCATGCTGCAGTCTCATTTGTTATCAGAATTAACCAGACAAAT 212056 >seq284 Length=1169891 Score = 87.8 bits (96), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 19/191 (10%) Strand=Plus/Minus Query 45 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTC 104 ||||| ||||||| |||||||||||||| |||| ||| |||||| | | ||| Sbjct 551298 TCTAAAGGCATCATAGACCTGTTATTGC-TCAATCTTGG--TGGCTGAAC-----TTGTC 551247 Query 105 CCTCTAAGAAGCCAGCCA---CCAACCATAGTCGATGGGG------CTATTTAGCAGGTT 155 |||||||| || | ||||| | || | || ||| |||||| | Sbjct 551246 CCTCTAAGGAGTTGGAGGATGCCAAC--TGCTCCAGGGTTGCATAACTAGTTAGCATGCC 551189 Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCA 215 | |||||| | |||| |||||||| ||||||||| ||||||||||||||||| |||| Sbjct 551188 AGGGTCTCCCTAGTTACAGGAATTAAACAGACAAATTGCTCCACCAACTAAGAACAGCCA 551129 Query 216 TGCACCACCAC 226 |||| |||||| Sbjct 551128 TGCAACACCAC 551118 >seq860 Length=655802 Score = 75.2 bits (82), Expect = 2e-11 Identities = 70/89 (79%), Gaps = 10/89 (11%) Strand=Plus/Minus Query 165 TTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACC 224 || |||||| | | | ||||||||||||||||||||| |||| ||||||| |||||| Sbjct 438700 TTGGTTATCAGTA--AGCCAGACAAATCACTCCACCAATGCAGAAAGGCCATGTACCACC 438643 Query 225 ACCCATAGAATCAAGAAAGAGCTATCAAT 253 ||| |||||||||||||||||| Sbjct 438642 ACC--------CAAGAAAGAGCTATCAAT 438622 >seq853 Length=656808 Score = 73.4 bits (80), Expect = 6e-11 Identities = 82/104 (79%), Gaps = 7/104 (7%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAA-TCACTCCACCAACTAAGAACGGCCATG 217 |||||||| |||| |||| |||||||||| || || |||||||||| | |||||| Sbjct 503900 GTCTCGTT---TATCACAATTCACCAGACAAAATCGCTTCACCAACTAAAACTGGCCATA 503844 Query 218 CACCACC-ACCCATAGAATCAAGAAAGAGCTATCAA-TCTGTCC 259 | ||||| ||||| ||| | |||||||||||||| |||||| Sbjct 503843 CCCCACCCACCCACGCAATGA-GAAAGAGCTATCAACCCTGTCC 503801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796390144257