Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq7165 351 2e-94 seq26482 331 2e-88 seq958 203 6e-50 seq2015 190 3e-46 seq596 167 4e-39 seq35822 100 5e-19 seq13376 95.1 2e-17 seq53 75.2 2e-11 >seq7165 Length=42025 Score = 351 bits (388), Expect = 2e-94 Identities = 255/294 (87%), Gaps = 1/294 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | |||||||| | | || ||||||||||||||||||||||||||||| Sbjct 30303 TACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 30244 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 30243 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 30184 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 30183 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 30124 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 30123 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 30064 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | | || | |||||||| ||||| | |||||| ||| ||||||| Sbjct 30063 TAAAACCCCAAAGGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 30010 >seq26482 Length=1300 Score = 331 bits (366), Expect = 2e-88 Identities = 231/263 (88%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||| ||||||||||||||| ||||||| || |||||||||||||||||||||||||| Sbjct 81 TCATCAATAGGGTAAAACTAACTTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTA 140 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 141 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 200 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 201 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 260 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | || | |||||||| ||| Sbjct 261 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCCTAAGGTCAGAAGGATCGTGAGG 320 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| || ||||||| Sbjct 321 CCCCGCTTTCACCGTCTGTATTC 343 >seq958 Length=614857 Score = 203 bits (224), Expect = 6e-50 Identities = 189/240 (79%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||| |||| || |||||||| | ||| || ||||||| |||||||| | ||||| || Sbjct 127017 ATCAGGAGGGAAACACTAACCTATTTCACGAGGGTCTAATGCCAGCTCATGCTCCCTGTT 126958 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | | ||||||||||||||||| |||||||| ||| | ||||||||||||||||| Sbjct 126957 GGCAGATGAACAATCCAACGCTTGGTGAATTCTGTTTCACAACGATAGGAAGAGCCGACA 126898 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 | |||||||||||||| || ||||||||| |||||||||||||||||| ||||||| Sbjct 126897 TTGAAGGATCAAAAAGTGACACTGCTATGAACATTTGGCTGCCACAAGCCAGCTATCCCT 126838 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||| ||||| || ||| || | ||| | || | |||||||| ||||| Sbjct 126837 GTGGTAACTCTTCTGACATCTCCCGCTTAAAACCCAAAAGGTCAGAAGGATCGTGAGGCC 126778 >seq2015 Length=341399 Score = 190 bits (210), Expect = 3e-46 Identities = 117/125 (94%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 78 CTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGA 137 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||| Sbjct 332099 CTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGA 332040 Query 138 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCAC 197 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| Sbjct 332039 TAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCAC 331980 Query 198 AAGCC 202 ||||| Sbjct 331979 AAGCC 331975 >seq596 Length=809796 Score = 167 bits (184), Expect = 4e-39 Identities = 193/259 (75%), Gaps = 6/259 (2%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 ||||||| |||||||||| ||| ||||||||||| |||| |||||||||| ||| | | Sbjct 804740 CATCAGTGGGGTAAAACTGCCCTATCTCATGACGGCCTAATCCCAGCTCACATTCTC-AC 804682 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 ||||||||| ||||| || ||| ||| |||||||| |||| |||||| | Sbjct 804681 TAGTGGGTGGTCAATCTGACACTTGATGAAGTCTGCTTCACAATGA-----AGAGCCAAT 804627 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 | | ||||| |||||| | || ||||||||| |||||| | || ||||||||||| Sbjct 804626 AGCTAAGGACTAAAAAGAAGAGTTGCTATGAACACTTGGCCATCCCATTCCAGTTATCCC 804567 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||| ||||||||||| ||||||| || | | || || | | | |||||| | |||| Sbjct 804566 TGTGATAACTTTTCTGACACCTCTTGCTTAAGATGTCAAAGATCAGAAGGATGGCGAGGC 804507 Query 272 CACACTTTCATGGTTTGTA 290 | |||||| || |||| Sbjct 804506 CCTGCTTTCACAGTCTGTA 804488 >seq35822 Length=1053 Score = 100 bits (110), Expect = 5e-19 Identities = 192/284 (68%), Gaps = 37/284 (13%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTT------ 85 ||||| ||| ||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 603 CATCATTAGAGTAAAACCAACCTGTCTCATGAAGGTCTAAACCCAGCTCATGTTGAGTGA 662 Query 86 --------------CCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC- 130 | || |||||| |||||| |||||| | | ||||||| |||| Sbjct 663 AGATCTAAACCCAGCTCTGTTAGTGAGTGAACCATCCAATGATAGGTGAATTCTCCTTCA 722 Query 131 --GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188 || || || ||| |||||| ||||| ||||||| | | || |||| |||| Sbjct 723 CAGGAATAGCAGAAAG---TGACATC-AAGGACCAAAAAGTGAGAT--CTCTGAATGCTT 776 Query 189 GGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC 248 ||| ||| ||||||| | |||||||||||||| |||||| || | ||| | Sbjct 777 GGCCGCCCAAAGCCAG-------TATGGTAACTTTTCTGACACCTCCTGCTTGAAA-CTA 828 Query 249 GAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | || || | | | | ||||| |||||| ||| |||||| Sbjct 829 AAAAGATTAGAAGGTTGGGAGGCCCTGCTTTCAGGGTCTGTATT 872 >seq13376 Length=3610 Score = 95.1 bits (104), Expect = 2e-17 Identities = 191/284 (67%), Gaps = 37/284 (13%) Strand=Plus/Plus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTT------ 85 ||||| ||| ||||||| |||||||||||||| ||||||||||||||||| ||| Sbjct 2113 CATCATTAGAGTAAAACCAACCTGTCTCATGAAGGTCTAAACCCAGCTCATGTTGAGTGA 2172 Query 86 --------------CCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC- 130 | || |||||| |||||| |||||| | | ||||||| |||| Sbjct 2173 AGATCTAAACCCAGCTCTGTTAGTGAGTGAACCATCCAATGATAGGTGAATTCTCCTTCA 2232 Query 131 --GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTT 188 || || || ||| |||||| ||||| ||||||| | | | |||| |||| Sbjct 2233 CAGGAATAGCAGAAAG---TGACATC-AAGGACCAAAAAGTGAGAT--TTCTGAATGCTT 2286 Query 189 GGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTC 248 ||| ||| ||||||| | |||||||||||||| |||||| || | ||| | Sbjct 2287 GGCCGCCCAAAGCCAG-------TATGGTAACTTTTCTGACACCTCCTGCTTGAAA-CTA 2338 Query 249 GAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | || || | | | | ||||| |||||| ||| |||||| Sbjct 2339 AAAAGATTAGAAGGTTGGGAGGCCCTGCTTTCAGGGTCTGTATT 2382 >seq53 Length=2238217 Score = 75.2 bits (82), Expect = 2e-11 Identities = 68/86 (79%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 142 AAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 ||||| | ||| ||||||||||||| || || || || | || ||||||||| | Sbjct 2180420 AAGAGACTACACTGAAGGATCAAAAATGAATGTTTCTCTGCTTGGTTATCTGCCACAAAC 2180361 Query 202 CAGTTATCCCTGTGGTAACTTTTCTG 227 | |||||||||||||||||||||||| Sbjct 2180360 CGGTTATCCCTGTGGTAACTTTTCTG 2180335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853946339232