Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq7165 197 3e-48 seq9384 147 4e-33 seq1784 80.6 5e-13 >seq7165 Length=42025 Score = 197 bits (218), Expect = 3e-48 Identities = 201/258 (78%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 17078 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 17135 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | | Sbjct 17136 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGCCTAC 17195 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| ||||| ||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 17196 CCTACGCCGGCAGGCGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 17255 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| ||||||||| Sbjct 17256 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCGTTGATT 17315 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||||||||||||| Sbjct 17316 AAGTCCCTGCCCTTTGTA 17333 >seq9384 Length=14792 Score = 147 bits (162), Expect = 4e-33 Identities = 192/259 (74%), Gaps = 9/259 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 298 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 241 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || | || | || Sbjct 240 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGGGTGTGC-CCA 182 Query 191 CCTTG-GCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATT 249 || | ||| | ||| | || | | | || | | ||||| ||||||| | | || Sbjct 181 CCCAGCGCCTGCAGGCGTCCGTCACCCGTTGAACCCCATTCGTGATGGGGATCGGGGGTT 122 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | || ||||||| || |||||| ||| ||||| ||| ||| | Sbjct 121 GCAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTTGCG----T 66 Query 310 TACGTCCCTGCCCTTTGTA 328 || |||||||||||||||| Sbjct 65 TAAGTCCCTGCCCTTTGTA 47 >seq1784 Length=378188 Score = 80.6 bits (88), Expect = 5e-13 Identities = 79/101 (78%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 229 TCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC 288 ||||| ||||||| | |||||||||||| ||| | || ||||||| | |||||| || Sbjct 145157 TCGTGATGGGGATCAGGGATTGCAATTATTCCTCATGAAAGAGGAATTTCCAGTAAGTGC 145216 Query 289 GTGTCATCAGCACGCGTTGATTACG-TCCCTGCCCTTTGTA 328 ||||| ||| || ||||||| | |||||||||||||| Sbjct 145217 AGGTCATAAGCTTGCATTGATTAAGCCCCCTGCCCTTTGTA 145257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946697065216