Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq26482 379 7e-103 seq7165 345 1e-92 seq7023 311 3e-82 seq2093 241 4e-61 seq355 239 1e-60 seq1546 185 3e-44 seq13376 176 1e-41 seq302 154 5e-35 seq1028 86.0 2e-14 >seq26482 Length=1300 Score = 379 bits (420), Expect = 7e-103 Identities = 276/329 (84%), Gaps = 32/329 (10%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 || |||||| |||||||||||||| ||| ||||| | | | |||||||||||||||||| Sbjct 673 CTTCCACTTGTTCTACACCTCTCATGTCTCTTCACCATGCCAGACTAGAGTCAAGCTCAA 732 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | Sbjct 733 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTGCCTTGGCTGTGGTTTCGCTGG 792 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||| || ||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 793 ATAACAGTTAGGGACAGTGGGAATCTCCTTCATCCATTCATGCGCGTCACTAATTAGATG 852 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 853 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTCA 912 Query 477 TTGAA--------------------------------TTTCTTCACTTTGACATTCAGAG 504 ||||| ||||||||||||||||||||||| Sbjct 913 TTGAAGTACTCCCGCCATCTACTCGCGCTTCATTGACTTTCTTCACTTTGACATTCAGAG 972 Query 505 CACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||||||||| | |||||| Sbjct 973 CACTGGGCAGAAATCACATCACTTCAACA 1001 Score = 113 bits (124), Expect = 1e-22 Identities = 86/102 (84%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 377 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 436 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACA 108 |||| |||| ||| ||||||||| ||||||||||||||| || Sbjct 437 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCA 478 >seq7165 Length=42025 Score = 345 bits (382), Expect = 1e-92 Identities = 200/206 (97%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 328 GCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTA 387 ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| Sbjct 29379 GCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGTTC 29320 Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 447 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29319 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCAT 29260 Query 448 AGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCAC 507 ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 29259 AGTTACTCCCGCCGTTTACCCGCGCTTCATTGAATTTCTTCACTTTGACATTCAGAGCAC 29200 Query 508 TGGGCAGAAATCACATTGCGTCAACA 533 |||||||||||||||| ||||||||| Sbjct 29199 TGGGCAGAAATCACATCGCGTCAACA 29174 Score = 306 bits (338), Expect = 1e-80 Identities = 186/197 (94%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 |||||||||||||||||||||||| ||| ||||| | | |||||||||||||||||| Sbjct 29576 CTCCCACTTATTCTACACCTCTCATGTCTCTTCACCGTGCCAGACTAGAGTCAAGCTCAA 29517 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 29516 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGG 29457 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 29456 ATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAATTAGATG 29397 Query 417 ACGAGGCATTTGGCTAC 433 ||||||||||||||||| Sbjct 29396 ACGAGGCATTTGGCTAC 29380 Score = 118 bits (130), Expect = 3e-24 Identities = 103/128 (80%), Gaps = 5/128 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | ||||||||||||||||||| Sbjct 29976 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACC 29917 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||| || |||| |||||| | Sbjct 29916 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGCACTGTC-----CCCGGAGC 29862 Query 127 GGCCCGCG 134 || |||| Sbjct 29861 GGGTCGCG 29854 >seq7023 Length=45024 Score = 311 bits (344), Expect = 3e-82 Identities = 247/297 (83%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| || ||||| ||||| ||||||| | ||||| | | |||||||||||||||| | Sbjct 38854 CTCTCATTTATTATACACTTCTCAAGGCTCTTCACTGTGCCAGACTAGAGTCAAGCTCTA 38913 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 || |||||| ||||||| |||||||| ||||||| ||||||||| |||| |||| ||| | Sbjct 38914 CAAGGTCTTATTTCCCCACTGATTCCACCAAGCCTGTTCCCTTGACTGTAGTTTTGCTGG 38973 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATG 416 |||||| |||| | |||||||||| ||| || |||||| | |||||||||||||| Sbjct 38974 GTAGTAGGTAGGAATTGTGGGAATCTTGTTTATTCATTCACATGTATCACTAATTAGATG 39033 Query 417 ACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGG 476 | ||||||||||||||||||||| ||||||||||||||| || |||||| | |||| Sbjct 39034 ATGAGGCATTTGGCTACCTTAAGGTGGTCATAGTTACTCCCACCATTTACCTGTGCTTCA 39093 Query 477 TTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACA 533 ||||||||||||| |||||| ||||||||||| ||||||||||| ||||| |||||| Sbjct 39094 TTGAATTTCTTCATTTTGACTTTCAGAGCACTAGGCAGAAATCATATTGCATCAACA 39150 >seq2093 Length=329953 Score = 241 bits (266), Expect = 4e-61 Identities = 198/237 (84%), Gaps = 7/237 (3%) Strand=Plus/Plus Query 285 AGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTG 344 ||| ||||||||| |||||| |||| |||||||| || |||| ||| |||||||| Sbjct 288308 AGTTAAGCTCAACCAGGTCTT---TCCCTGCTGATTCTGCAAAGCTAGTTGTCTTGGCTG 288364 Query 345 TGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 || |||| |||| || ||| ||||||| ||||||||| ||| |||||||||| || || Sbjct 288365 TG-TTTCACTAGTTACTAGGTAGGGACCTTGGGAATCTTGTTCATCCATTCATAAGCATC 288423 Query 405 ACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTT 464 | || |||||||| |||||||||||||||||| ||||||||||||||||||| | || Sbjct 288424 ATTATTTAGATGATGAGGCATTTGGCTACCTT--GAGAGTCATAGTTACTCCCTGTG-TT 288480 Query 465 ACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCAC 521 |||| | ||| ||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 288481 ACCCTCACTTCATTGAATTTCTTCACTATGACATTCAGAGCACTGGGCAGAAATCAC 288537 >seq355 Length=1043905 Score = 239 bits (264), Expect = 1e-60 Identities = 162/182 (89%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 336 CCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTC 395 ||||||||||||||| ||| |||||||| ||||||||||||||||| ||| |||||||| Sbjct 467387 CCTTGGCTGTGGTTTTGCTGGATAGTAGGTAGGGACAGTGGGAATCGTGTTCATCCATTC 467446 Query 396 ATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTC 455 |||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||| Sbjct 467447 ATGCGCATCACTACTTAGATGACGAGGCATTTGGCTACCTCGAGAGAGTCATAGTTACTC 467506 Query 456 CCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGA 515 ||||| ||| |||| ||| ||||||||| |||||||||||||||||| |||||||| Sbjct 467507 CCGCCATTTGCCCGTGCTCCACTGAATTTCTGTACTTTGACATTCAGAGCAGTGGGCAGA 467566 Query 516 AA 517 || Sbjct 467567 AA 467568 >seq1546 Length=424993 Score = 185 bits (204), Expect = 3e-44 Identities = 216/288 (75%), Gaps = 3/288 (1%) Strand=Plus/Minus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC-GGACTAGAGTCAAGCTCA 295 |||||||||| |||||||||| | | ||||| | | | || || | ||||| || Sbjct 384531 CTCCCACTTAATCTACACCTCCTGTGCCTCTTCACCATGCCAGGTTTACAATCAAGTGCA 384472 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||| ||||||| ||| | |||| ||| |||| | ||| |||||| |||| | Sbjct 384471 GCAGAGTCTTCTCGGCCCACAGATTTTGCCCAGCCA-TCCCCCTGGCTGCAGTTTTATCA 384413 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||| ||| || |||| ||||| || || || ||||||||| ||| |||| ||||| Sbjct 384412 AATAATAGGTAAAGACAACAGGAATATCATTCATTCATTCATGCATGTCCCTAACTAGAT 384353 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCC-GCCGTTTACCCGCGCTT 474 | ||||||||||||||||||||||||||||| ||||| ||| | | |||| | | || Sbjct 384352 GGTGAGGCATTTGGCTACCTTAAGAGAGTCATGGTTACACCCATCAATCTACCTGGGTTT 384293 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACA 522 | |||||||||||||||||||||||||||||||||| |||| ||| Sbjct 384292 CAGTAAATTTCTTCACTTTGACATTCAGAGCACTGGGCAAAAATAACA 384245 >seq13376 Length=3610 Score = 176 bits (194), Expect = 1e-41 Identities = 220/297 (74%), Gaps = 20/297 (7%) Strand=Plus/Plus Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||| |||||||||||||| ||||| || ||||| | ||||||||||| |||||| Sbjct 2552 CTCTCACTTATTCTACACTTCTCA-GTATCTTCACTGTCACAGACTAGAGTCATGCTCAA 2610 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT--CCCTTGGCTGTGGTTTCGCT 354 ||||||| ||||| |||||||| ||| | | || ||||| || || ||||| || Sbjct 2611 CAGGGTCGTCTTTGTAAGCTGATTCTCTCAAACTCATTGCCCCTTAGCCGTAGTTTCACT 2670 Query 355 AGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGA 414 || || |||| |||||| ||| || | ||||||| ||| ||||||||| Sbjct 2671 AG------------GATAGTGAGAATCTTGTTCATTCGTTCATGCATGTCTCTAATTAGA 2718 Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 || | |||||||| ||||||||||| ||| || ||||| | ||| |||||| || || Sbjct 2719 TGGTGGGGCATTTGTCTACCTTAAGACAGT--TAATTACT-CTGCCATTTACCTGC-TTT 2774 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAA 531 |||| ||| ||| || |||||| | |||||||| ||||||||||||| | |||| Sbjct 2775 CATTGAGTTT-TTCTCTCTGACATAGAAAGCACTGGACAGAAATCACATTACATCAA 2830 >seq302 Length=1125099 Score = 154 bits (170), Expect = 5e-35 Identities = 120/143 (84%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 239 CCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACA 298 |||||| | |||||||||||| ||| ||||| | | || |||||||||||||||| Sbjct 347381 CCCACTCGTCCTACACCTCTCATGTCTCTTCACCGTGCCAGAACAGAGTCAAGCTCAACA 347440 Query 299 GGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGAT 358 |||||||||||| |||||||||| ||||| |||| ||||| |||||||| |||||| ||| Sbjct 347441 GGGTCTTCTTTCTCCGCTGATTCTGCCAAACCCGCTCCCTCGGCTGTGGGTTCGCTGGAT 347500 Query 359 AGTAGATAGGGACAGTGGGAATC 381 |||| ||| ||||||||||||| Sbjct 347501 AGTACGTAGCGACAGTGGGAATC 347523 >seq1028 Length=584436 Score = 86.0 bits (94), Expect = 2e-14 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 333 TTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCA 392 ||| ||||||||| ||||| || |||||||| ||||||||||||||||||| |||||||| Sbjct 548111 TTCTCTTGGCTGTAGTTTCTCTGGATAGTAGGTAGGGACAGTGGGAATCTCATTAATCCA 548052 Query 393 TT 394 || Sbjct 548051 TT 548050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634331757856