Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05] 53,097 sequences; 2,395,954,271 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq7165 313 8e-83 seq9384 262 1e-67 seq1319 125 2e-26 seq20433 123 8e-26 seq860 96.9 1e-17 seq23 84.2 7e-14 seq853 75.2 3e-11 >seq7165 Length=42025 Score = 313 bits (346), Expect = 8e-83 Identities = 367/492 (75%), Gaps = 62/492 (13%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 16239 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 16180 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 16179 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 16120 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 16119 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 16060 Query 182 GCCACTATC--CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 || || | | |||||||||||||||||||||||||| || ||||| | |||||| | Sbjct 16059 GC-AC-AGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCC 16002 Query 240 TC-AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGC----- 284 | || | |||||| | | ||||| || ||||||| || || Sbjct 16001 ACGGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCC 15942 Query 285 ------------CCCGAAGG---------GCGTTGGTTTTTTATCTAATAAATACA---- 319 || | ||| | ||||| |||| |||| |||||| || Sbjct 15941 CCCCGGCCGGGGCCGGGAGGAGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCA 15883 Query 320 --CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACG 370 |||| ||||| ||||| | |||||||||||||||||||||||||| Sbjct 15882 TCCCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACA 15825 Query 371 GTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425 |||||||| |||| | || | | | |||| ||| ||||||||||||||||||||| Sbjct 15824 GTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCAT 15765 Query 426 TCGCAGTTTCAC 437 |||||||||||| Sbjct 15764 TCGCAGTTTCAC 15753 Score = 179 bits (198), Expect = 1e-42 Identities = 140/166 (84%), Gaps = 6/166 (4%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398 |||||||||||||||||||||||||| |||||||| |||| | | | | | |||| Sbjct 15745 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 15686 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||||||||||||||||||||||||||||||| | | |||||| Sbjct 15685 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 15626 Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 15625 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 15581 Score = 86.0 bits (94), Expect = 2e-14 Identities = 51/52 (98%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 15547 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 15497 >seq9384 Length=14792 Score = 262 bits (290), Expect = 1e-67 Identities = 204/238 (86%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 |||||||||||||||| | || | |||||| ||||||| ||||| | ||||||||||| Sbjct 1286 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 1345 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 ||| ||||||| ||||||||| ||||||||||||| |||||||||||| |||||| ||| Sbjct 1346 CCCAGGTCGGGAGTGGGTAATTCGCGCGCCTGCTGCTTTCCTTGGATGTAGTAGCCATTT 1405 Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181 ||||||||||||||||||||||||||||| ||||||||| |||||| | |||||||||| Sbjct 1406 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 1465 Query 182 GC-CA-CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237 || || | | |||||||||||||||||||||||||| || ||||| | |||||| Sbjct 1466 GCACAGCGA--CTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCG 1521 Score = 176 bits (194), Expect = 1e-41 Identities = 140/167 (84%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAA 397 ||||||||||||||||||||||||||| |||||||| |||| | | | | | ||| Sbjct 1698 AGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCCAGCGACCAA 1757 Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457 | ||| ||||||||||||||||||||||||||||| ||||||| | | ||||| Sbjct 1758 AGGAACCATAACTGATTTAATGAGCCATTCGCAGTTGCACTGTACCGGCCGTGCGTACTT 1817 Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1818 AGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1863 >seq1319 Length=481703 Score = 125 bits (138), Expect = 2e-26 Identities = 142/187 (76%), Gaps = 14/187 (7%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACA-AGACCCAAAA--GAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||| || | ||||| ||||||||||| ||||| | |||| ||| Sbjct 212358 ACTCATTCCAATTACACAGTCTCAAAAAAGAGCCCTGTATTGTTATTTTTCTTCACCACC 212417 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | ||| | | || |||||||||||| |||||||||||||||| |||||| || Sbjct 212418 TTCCCCTCA-GAGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTTGATGTG------GT 212470 Query 120 TTCTCAGGCTCCCTCTCCGGAATC----GAACCCTAATTCCCCGTTACCCGTTGATACCA 175 ||||||||||||||||| || | ||||||| |||||| || |||| | |||| Sbjct 212471 TTCTCAGGCTCCCTCTCGAGACCCAGGTGAACCCTGATTCCCTGTAACCCACGGTCACCA 212530 Query 176 TGGTAGG 182 ||| ||| Sbjct 212531 TGGCAGG 212537 >seq20433 Length=1608 Score = 123 bits (136), Expect = 8e-26 Identities = 130/170 (76%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126 || |||| |||||||||||| | ||||| ||||||||||| ||||| |||| |||| Sbjct 1335 GTGGGGAGTGGGTAATTTGCATACTCACTGCCATCCTTGGATGTAGTAGCTGTTTTTCAG 1394 Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186 |||||||| | ||||| ||||||| ||||||| | |||| || | |||||||||| Sbjct 1395 GCTCCCTCCCAGGAATTGAACCCTGATTCCCCATCACCC-CTGGTCACATGGTAGGCATG 1453 Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236 || ||||||| ||| |||| | |||| |||||| ||| |||| || Sbjct 1454 GTAACTGCCATCGAGAGTCGATAAGACAGATATTTGACTGAGTCATCACC 1503 >seq860 Length=655802 Score = 96.9 bits (106), Expect = 1e-17 Identities = 123/167 (74%), Gaps = 8/167 (5%) Strand=Plus/Minus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||| |||||||||||| |||| | |||||| || || | | ||| | ||||| | Sbjct 437904 ACTTATTCCAATTACAGGACCTCGAAAGAGTCCAGTGT---TGTTTTTCATCACTGCTCT 437848 Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121 || | |||| || ||||||||||||| |||||||||||||||| || ||||| | || Sbjct 437847 CCTGGGTCGCGAGCAGGTAATTTGCGCGACTGCTGCCTTCCTTGGTTGGGGTAGTTGATT 437788 Query 122 CTCAGGCTCCCTCTCCGGAATCGA----ACCCTAATTCCCCGTTACC 164 | |||||||||| |||| ||| |||| ||||||| | ||| Sbjct 437787 ATGAGGCTCCCTCCGTGGAACCGAACACACCCAGATTCCCCATCACC 437741 >seq23 Length=2634677 Score = 84.2 bits (92), Expect = 7e-14 Identities = 89/115 (77%), Gaps = 3/115 (3%) Strand=Plus/Minus Query 2 TACTCATTCCAATTACAAGAC-CCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||| ||||| ||| | |||||| ||||||| ||||| ||||||||| || Sbjct 1931260 TACTCATTCCAGTTACAGGACACTGAAAGAGTCCTGTATTGTTATTTTTTGTCACTATCT 1931201 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115 |||| ||| ||| ||||| ||||| | || |||||| | ||||| || ||| Sbjct 1931200 CCCCAGGTCAGGAGTGGGT--TTTGCACACCAGCTGCCATTGTTGGACATGATAG 1931148 >seq853 Length=656808 Score = 75.2 bits (82), Expect = 3e-11 Identities = 112/153 (73%), Gaps = 6/153 (4%) Strand=Plus/Minus Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131 || |||||||||| | || |||||| ||||||||||||||| | ||||||| || | Sbjct 503255 GAGTGGGTAATTTTCATACC-GCTGCCATCCTTGGATGTGGTAAC--GTTCTCAGCCTTC 503199 Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT-C 190 |||||| |||| ||| ||| ||| || | ||||| || | | |||||| ||| | Sbjct 503198 CTCTCCAGAATTGAATCCTGATTTCCAATCACCCG-TGGTCACTGGGTAGG-CACGGTGA 503141 Query 191 CTACCATCGAAAGTTGATAGGGCAGAAATTTGA 223 || ||| || ||||||| || ||| ||| || Sbjct 503140 CTTCCACTGAGAGTTGATGAGGTAGACATTCGA 503108 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509598022912