Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Equus_20przewalskii_20[refseq_20GCF_5F000696695.1_202014-06-05]
53,097 sequences; 2,395,954,271 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq7165 313 8e-83
seq9384 262 1e-67
seq1319 125 2e-26
seq20433 123 8e-26
seq860 96.9 1e-17
seq23 84.2 7e-14
seq853 75.2 3e-11
>seq7165
Length=42025
Score = 313 bits (346), Expect = 8e-83
Identities = 367/492 (75%), Gaps = 62/492 (13%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 16239 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 16180
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16179 CCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 16120
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 16119 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 16060
Query 182 GCCACTATC--CTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239
|| || | | |||||||||||||||||||||||||| || ||||| | |||||| |
Sbjct 16059 GC-AC-AGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCC 16002
Query 240 TC-AAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACCAA-------GGAGC----- 284
| || | |||||| | | ||||| || ||||||| || ||
Sbjct 16001 ACGGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCC 15942
Query 285 ------------CCCGAAGG---------GCGTTGGTTTTTTATCTAATAAATACA---- 319
|| | ||| | ||||| |||| |||| |||||| ||
Sbjct 15941 CCCCGGCCGGGGCCGGGAGGAGGCTGACCGGGTTGG-TTTTGATCTGATAAATGCACGCA 15883
Query 320 --CCCCTTCCGAAGTCGGGGT-------TTTTAGCATGTATTAGCTCTAGAATTACCACG 370
|||| ||||| ||||| | ||||||||||||||||||||||||||
Sbjct 15882 TCCCCCCCGCGAAG--GGGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACA 15825
Query 371 GTTATCCATGTAGTA-AG----GTACTATCAAATAAACGATAACTGATTTAATGAGCCAT 425
|||||||| |||| | || | | | |||| ||| |||||||||||||||||||||
Sbjct 15824 GTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGCCAT 15765
Query 426 TCGCAGTTTCAC 437
||||||||||||
Sbjct 15764 TCGCAGTTTCAC 15753
Score = 179 bits (198), Expect = 1e-42
Identities = 140/166 (84%), Gaps = 6/166 (4%)
Strand=Plus/Minus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAAA 398
|||||||||||||||||||||||||| |||||||| |||| | | | | | ||||
Sbjct 15745 GCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAA 15686
Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458
||| ||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 15685 GGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTA 15626
Query 459 GACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 15625 GACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 15581
Score = 86.0 bits (94), Expect = 2e-14
Identities = 51/52 (98%), Gaps = 1/52 (2%)
Strand=Plus/Minus
Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 15547 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 15497
>seq9384
Length=14792
Score = 262 bits (290), Expect = 1e-67
Identities = 204/238 (86%), Gaps = 5/238 (2%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
|||||||||||||||| | || | |||||| ||||||| ||||| | |||||||||||
Sbjct 1286 ACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTC 1345
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
||| ||||||| ||||||||| ||||||||||||| |||||||||||| |||||| |||
Sbjct 1346 CCCAGGTCGGGAGTGGGTAATTCGCGCGCCTGCTGCTTTCCTTGGATGTAGTAGCCATTT 1405
Query 122 CTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAG 181
||||||||||||||||||||||||||||| ||||||||| |||||| | ||||||||||
Sbjct 1406 CTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAG 1465
Query 182 GC-CA-CTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCG 237
|| || | | |||||||||||||||||||||||||| || ||||| | ||||||
Sbjct 1466 GCACAGCGA--CTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCG 1521
Score = 176 bits (194), Expect = 1e-41
Identities = 140/167 (84%), Gaps = 6/167 (4%)
Strand=Plus/Plus
Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTA-----CTATCAA 397
||||||||||||||||||||||||||| |||||||| |||| | | | | | |||
Sbjct 1698 AGCATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAGGAGAGGAGCCAGCGACCAA 1757
Query 398 ATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTT 457
| ||| ||||||||||||||||||||||||||||| ||||||| | | |||||
Sbjct 1758 AGGAACCATAACTGATTTAATGAGCCATTCGCAGTTGCACTGTACCGGCCGTGCGTACTT 1817
Query 458 AGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1818 AGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1863
>seq1319
Length=481703
Score = 125 bits (138), Expect = 2e-26
Identities = 142/187 (76%), Gaps = 14/187 (7%)
Strand=Plus/Plus
Query 3 ACTCATTCCAATTACA-AGACCCAAAA--GAGCCCTGTATCAGTATTTATTGTCACTACC 59
|||||||||||||||| || | ||||| ||||||||||| ||||| | |||| |||
Sbjct 212358 ACTCATTCCAATTACACAGTCTCAAAAAAGAGCCCTGTATTGTTATTTTTCTTCACCACC 212417
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
| ||| | | || |||||||||||| |||||||||||||||| |||||| ||
Sbjct 212418 TTCCCCTCA-GAGAGTGGGTAATTTGCATGCCTGCTGCCTTCCTTTGATGTG------GT 212470
Query 120 TTCTCAGGCTCCCTCTCCGGAATC----GAACCCTAATTCCCCGTTACCCGTTGATACCA 175
||||||||||||||||| || | ||||||| |||||| || |||| | ||||
Sbjct 212471 TTCTCAGGCTCCCTCTCGAGACCCAGGTGAACCCTGATTCCCTGTAACCCACGGTCACCA 212530
Query 176 TGGTAGG 182
||| |||
Sbjct 212531 TGGCAGG 212537
>seq20433
Length=1608
Score = 123 bits (136), Expect = 8e-26
Identities = 130/170 (76%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 67 GTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAG 126
|| |||| |||||||||||| | ||||| ||||||||||| ||||| |||| ||||
Sbjct 1335 GTGGGGAGTGGGTAATTTGCATACTCACTGCCATCCTTGGATGTAGTAGCTGTTTTTCAG 1394
Query 127 GCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCAC 186
|||||||| | ||||| ||||||| ||||||| | |||| || | ||||||||||
Sbjct 1395 GCTCCCTCCCAGGAATTGAACCCTGATTCCCCATCACCC-CTGGTCACATGGTAGGCATG 1453
Query 187 TATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCC 236
|| ||||||| ||| |||| | |||| |||||| ||| |||| ||
Sbjct 1454 GTAACTGCCATCGAGAGTCGATAAGACAGATATTTGACTGAGTCATCACC 1503
>seq860
Length=655802
Score = 96.9 bits (106), Expect = 1e-17
Identities = 123/167 (74%), Gaps = 8/167 (5%)
Strand=Plus/Minus
Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61
||| |||||||||||| |||| | |||||| || || | | ||| | ||||| |
Sbjct 437904 ACTTATTCCAATTACAGGACCTCGAAAGAGTCCAGTGT---TGTTTTTCATCACTGCTCT 437848
Query 62 CCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTT 121
|| | |||| || ||||||||||||| |||||||||||||||| || ||||| | ||
Sbjct 437847 CCTGGGTCGCGAGCAGGTAATTTGCGCGACTGCTGCCTTCCTTGGTTGGGGTAGTTGATT 437788
Query 122 CTCAGGCTCCCTCTCCGGAATCGA----ACCCTAATTCCCCGTTACC 164
| |||||||||| |||| ||| |||| ||||||| | |||
Sbjct 437787 ATGAGGCTCCCTCCGTGGAACCGAACACACCCAGATTCCCCATCACC 437741
>seq23
Length=2634677
Score = 84.2 bits (92), Expect = 7e-14
Identities = 89/115 (77%), Gaps = 3/115 (3%)
Strand=Plus/Minus
Query 2 TACTCATTCCAATTACAAGAC-CCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||| ||||| ||| | |||||| ||||||| ||||| ||||||||| ||
Sbjct 1931260 TACTCATTCCAGTTACAGGACACTGAAAGAGTCCTGTATTGTTATTTTTTGTCACTATCT 1931201
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG 115
|||| ||| ||| ||||| ||||| | || |||||| | ||||| || |||
Sbjct 1931200 CCCCAGGTCAGGAGTGGGT--TTTGCACACCAGCTGCCATTGTTGGACATGATAG 1931148
>seq853
Length=656808
Score = 75.2 bits (82), Expect = 3e-11
Identities = 112/153 (73%), Gaps = 6/153 (4%)
Strand=Plus/Minus
Query 72 GATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCC 131
|| |||||||||| | || |||||| ||||||||||||||| | ||||||| || |
Sbjct 503255 GAGTGGGTAATTTTCATACC-GCTGCCATCCTTGGATGTGGTAAC--GTTCTCAGCCTTC 503199
Query 132 CTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT-C 190
|||||| |||| ||| ||| ||| || | ||||| || | | |||||| ||| |
Sbjct 503198 CTCTCCAGAATTGAATCCTGATTTCCAATCACCCG-TGGTCACTGGGTAGG-CACGGTGA 503141
Query 191 CTACCATCGAAAGTTGATAGGGCAGAAATTTGA 223
|| ||| || ||||||| || ||| ||| ||
Sbjct 503140 CTTCCACTGAGAGTTGATGAGGTAGACATTCGA 503108
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1509598022912
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |