Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq826 143 4e-32 seq441 127 3e-27 seq338 122 1e-25 seq121 102 1e-19 seq402 93.3 6e-17 seq286 84.2 3e-14 seq6 84.2 3e-14 seq883 80.6 4e-13 >seq826 Length=936100 Score = 143 bits (158), Expect = 4e-32 Identities = 165/218 (76%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| |||||| |||||| | Sbjct 121598 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTGGGAATT-C 121541 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 ||| || | | || ||||||||| ||| |||||||| || | ||||| | || Sbjct 121540 CTCATTCATGGGTAATAATTGCAATCCCCTACCCCCATCATGAATAGGGTTCAACGGGTT 121481 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| ||||| | || ||| | || | ||| | ||||||||| |||||| Sbjct 121480 ACCCGCACCTGCCAGCGTAGGGTAGTCACATGCTGAGCCAGTTAGTGTAGCGAGCGTGCA 121421 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||| | |||||||| |||||||||||||||||||||| Sbjct 121420 GCCTGGGACATCTAATGGCATCACAGACCTGTTATTGC 121383 >seq441 Length=2030139 Score = 127 bits (140), Expect = 3e-27 Identities = 169/229 (74%), Gaps = 8/229 (3%) Strand=Plus/Minus Query 6 AAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGT 65 |||||||||||| || | | ||| | ||||| | | |||||| |||||| |||||| Sbjct 1495930 AAGGGCAGGGACTTAAT----GTCAGCGT-ATGACCCTCACTTACTGGGAATT-CCTCGT 1495877 Query 66 TGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCG 124 | | | || ||||||||| ||||||||||||| ||||| | ||||||| Sbjct 1495876 TCATGGGGAATAATTGCAATCCCTGATCCCCATCACGAATGGGGTTCAACGGGTTACCCG 1495817 Query 125 GACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCA 184 |||| |||| ||| | || || ||| |||||||||||||||||| |||| Sbjct 1495816 CGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCC 1495757 Query 185 GAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 1495756 GGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 1495709 Score = 96.9 bits (106), Expect = 5e-18 Identities = 173/242 (71%), Gaps = 28/242 (12%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||| | |||| ||||| | | |||||| |||||| | Sbjct 1392955 GTACAAAGGGCAGGGACTTAATCAACACACGCTT-ATGACCCACACTTACTGGGAATT-C 1392898 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAA-A 115 ||| || | | || ||||| ||| ||||||||| |||| ||||| | Sbjct 1392897 CTCATTCATGGGGAATAATTGTAATC------CCCCATCAC----AAATGGGGTTCAACA 1392848 Query 116 GATTACCCGGACCTGTCGGCCAAGGT-GA-TAG--ACTCGTTGAATACATCAGTGTAGCG 171 | ||||| | ||||| ||| || || ||| || || ||| ||||||||| | Sbjct 1392847 GGTTACCAGCACCTG----CCAGTGTAGAGTAGGCACACGCTGAGCCTGTCAGTGTAGTG 1392792 Query 172 CGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 | ||| |||| | ||||||||||||| |||||| |||||| || ||||| ||| ||| Sbjct 1392791 GG--TGCAGCCCCGGACATCTAAGGGCACCACAGATCTGTTACTG-CTCAATCTTGGGTG 1392735 Query 232 GC 233 || Sbjct 1392734 GC 1392733 >seq338 Length=2461381 Score = 122 bits (134), Expect = 1e-25 Identities = 165/224 (74%), Gaps = 12/224 (5%) Strand=Plus/Plus Query 11 CAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTTGAAG 70 ||||||| || |||| || ||||| |||| | | |||||| |||||| |||||| | | Sbjct 2400506 CAGGGAC-TAATCAATGCAAGCTT-ATGATCCTCACTTACTGGGAATT-CCTCGTCCATG 2400562 Query 71 ACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATTACCCGGACCT 129 || ||||||||| ||||||||||| ||||| || ||||||| ||| Sbjct 2400563 GGGAATAATTGCAAT-------CCCCATCACGAATGGGGTTCAACAGGTTACCCGCGCCT 2400615 Query 130 GTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACA 189 | ||| ||| | || || ||| |||||||||||||||||| |||| | ||| Sbjct 2400616 GCTGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACA 2400675 Query 190 TCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 ||||||||||||||||||||||||||| ||||| || ||||| Sbjct 2400676 TCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 2400718 >seq121 Length=4977944 Score = 102 bits (112), Expect = 1e-19 Identities = 170/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||| |||||||||||| || ||||| | ||||| ||||| | | |||||| |||||| | Sbjct 1925150 GTACTAAGGGCAGGGACTTAATCAACTCAAGCTT-ATGACCCACACTTACTGGGAATT-C 1925207 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGA-TGAAATTTCAAAGATT 119 || | | | | || ||||||||| ||||| ||||||| || || || || | Sbjct 1925208 CTTGCTCATGGGTAATAATTGCAATCCCTGATCCCTATCACGAATGGGGTTCCACGGACT 1925267 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAG-ACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 | ||| ||||| || ||| | | | | || ||| |||||||||| || ||| Sbjct 1925268 ATCCGCACCTGCTGGTGTAGG-GTTGGCAATCACTGAGCCAGTCAGTGTAGCATGCATGC 1925326 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 || | || || |||||||||||||||||||| ||||| ||||| | || ||||| Sbjct 1925327 AGCGCCGA-CACCTAAGGGCATCACAGACCTGCTATTG-CTCAATC-TCGGTGGC 1925378 >seq402 Length=2174813 Score = 93.3 bits (102), Expect = 6e-17 Identities = 91/116 (78%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 118 TTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTG 177 ||||||| |||| |||| ||| | || || ||| ||||||||||||||||| Sbjct 1558888 TTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTG 1558829 Query 178 CGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 | |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 1558828 CAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 1558774 >seq286 Length=2937124 Score = 84.2 bits (92), Expect = 3e-14 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||||||||||| | |||| |||| | |||||||||||||||||||||||||||||| ||| Sbjct 1304057 TCAGTGTAGCGTGTGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 1304115 Query 221 AAACTTCCGTGGC 233 || || ||||| Sbjct 1304116 AATCTCGGGTGGC 1304128 >seq6 Length=12956524 Score = 84.2 bits (92), Expect = 3e-14 Identities = 79/97 (81%), Gaps = 3/97 (3%) Strand=Plus/Minus Query 7 AGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCGTT 66 ||||||||||| || |||| || ||||| ||||||||| |||||| |||| ||||||||| Sbjct 419926 AGGGCAGGGACTTAATCAAAGCAAGCTT-ATGACTCGCACTTACTGGGAA-TTCCTCGTT 419869 Query 67 GAAGACCAACAATTGCAATGATCTATCCCCATCACGA 103 | | || ||||||||| | ||||||||||||| Sbjct 419868 CATGGGGAATAATTGCAAT-CCCCATCCCCATCACGA 419833 >seq883 Length=813231 Score = 80.6 bits (88), Expect = 4e-13 Identities = 57/64 (89%), Gaps = 1/64 (2%) Strand=Plus/Minus Query 162 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCA 221 |||||||| |||| ||| |||| | |||||||||||||||||||||||||||||| |||| Sbjct 93009 CAGTGTAGAGCGCATGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCA 92951 Query 222 AACT 225 | || Sbjct 92950 ATCT 92947 Score = 73.4 bits (80), Expect = 6e-11 Identities = 56/65 (86%), Gaps = 1/65 (2%) Strand=Plus/Minus Query 161 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 220 ||| |||||||| || | |||| | |||||||||||||||||||||||||||||| ||| Sbjct 92882 TCACTGTAGCGCATGTTCAGCCCTGGACATCTAAGGGCATCACAGACCTGTTATTG-CTC 92824 Query 221 AAACT 225 || || Sbjct 92823 AATCT 92819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751957725145