Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19]
5,803 sequences; 2,715,720,925 total letters
Query= AAMG01000278.1
Length=318
Score E
Sequences producing significant alignments: (Bits) Value
seq347 159 6e-37
seq826 129 1e-27
seq788 113 8e-23
seq286 87.8 3e-15
seq15 73.4 7e-11
>seq347
Length=2345083
Score = 159 bits (176), Expect = 6e-37
Identities = 187/248 (75%), Gaps = 5/248 (2%)
Strand=Plus/Plus
Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC--TC-GAATACATTAGCAT 130
|||||||||||||||||||||||||||||||||||| || || | |||| |||
Sbjct 103885 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAGCCGTCTGGATACCGCAGCTA 103944
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
||||||| ||||||||| |||||||||||||||||||||| | || | | |||||
Sbjct 103945 CGAATAATGGAATAGGAC-TGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 104003
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250
||| ||||| | ||||| | ||||| | |||||||||||||||||| |
Sbjct 104004 TAAGAGGGACGGCTGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGT 104063
Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310
||||| || | | |||||| || ||||| |||||||||||||||| ||| ||||
Sbjct 104064 GCAAGACGGACCAGAGTGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAA 104122
Query 311 GTTAGGGG 318
|| || ||
Sbjct 104123 GTCAGAGG 104130
>seq826
Length=936100
Score = 129 bits (142), Expect = 1e-27
Identities = 180/244 (74%), Gaps = 9/244 (4%)
Strand=Plus/Plus
Query 74 TTTACTTTGAAAAAATTA-GAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCA 129
|||||||||||||||||| |||||||||||||||| || ||| | |||| |||
Sbjct 184365 TTTACTTTGAAAAAATTAAGAGTGTTCAAAGCAGGTCTGAGCTGCCTGGATACTGCAGCT 184424
Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189
|||||||| ||||||||| ||||||||||||||||||||| | || | ||||
Sbjct 184425 AGGAATAATGGAATAGGACC-GCGGTTCTATTTTGTTGGTTTTCGGAACTGAGACTATGA 184483
Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248
|||| || || | || ||| ||| |||| | | |||| |||||||||||||
Sbjct 184484 TTAAGAGAGAGGGCTCAGGGCATTCA-TATTGCACAGCTAGAG-TGAAATTCTTGGACCG 184541
Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308
|||||| || | | ||||| || | ||| |||||||||||||||| ||||||
Sbjct 184542 GCACAAGACTGACCAGAGAAAAAGCATTTGCAAAGAATGTTTTCATTAATCA-AGAACGA 184600
Query 309 AAGT 312
||||
Sbjct 184601 AAGT 184604
Score = 86.0 bits (94), Expect = 1e-14
Identities = 117/162 (72%), Gaps = 1/162 (1%)
Strand=Plus/Plus
Query 151 GCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGT 210
|||||| |||||||||||||| | | || | | |||||||| |||||| |||||
Sbjct 120498 GCGGTTTTATTTTGTTGGTTTTTGGAACTGAGGCCATGATTAAGAGGGATGACTGGGGGC 120557
Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270
| ||||| | | |||||||||||||||||| ||||| || | |||||
Sbjct 120558 ATTCGTATTGCACCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAA 120617
Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312
||| || ||||| |||||||| | ||||| |||| |||||
Sbjct 120618 AGCATTTGCCAAGAATGTTTTCGTGAATCA-AGAACAAAAGT 120658
>seq788
Length=930302
Score = 113 bits (124), Expect = 8e-23
Identities = 109/137 (80%), Gaps = 5/137 (4%)
Strand=Plus/Minus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | | ||||||||||||||||||||||||
Sbjct 299326 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 299267
Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154
|||||||||||| || | |||| ||| |||||||| ||||||||| ||||
Sbjct 299266 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGG 299208
Query 155 TTCTATTTTGTTGGTTT 171
|||||||||||||||||
Sbjct 299207 TTCTATTTTGTTGGTTT 299191
>seq286
Length=2937124
Score = 87.8 bits (96), Expect = 3e-15
Identities = 89/115 (77%), Gaps = 1/115 (1%)
Strand=Plus/Minus
Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190
|||||||| ||||||||| |||||||||||||||||||| || || | | |||||
Sbjct 1304020 GGAATAATGGAATAGGACCA-CGGTTCTATTTTGTTGGTTTTCAGAACTGAGGCCATGAT 1303962
Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245
||| ||||| || |||||| | ||||| | ||||||||||||||||||
Sbjct 1303961 TAAGAGGGACAGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 1303907
>seq15
Length=10322312
Score = 73.4 bits (80), Expect = 7e-11
Identities = 60/72 (83%), Gaps = 1/72 (1%)
Strand=Plus/Plus
Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97
|||| ||| ||| |||| ||| || ||| | | ||||||||||||||||||||||||
Sbjct 8004511 ATGCTCTTAGCTGAGTGTCCCGTGGGGCCCGATATGTTTACTTTGAAAAAATTAGAGTGT 8004570
Query 98 TCAAAGCAGGCC 109
||||||||||||
Sbjct 8004571 TCAAAGCAGGCC 8004582
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 915146890944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |