Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Erinaceus_20europaeus_20[refseq_20GCF_5F000296755.1_202012-09-19] 5,803 sequences; 2,715,720,925 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq347 159 6e-37 seq826 129 1e-27 seq788 113 8e-23 seq286 87.8 3e-15 seq15 73.4 7e-11 >seq347 Length=2345083 Score = 159 bits (176), Expect = 6e-37 Identities = 187/248 (75%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGC--TC-GAATACATTAGCAT 130 |||||||||||||||||||||||||||||||||||| || || | |||| ||| Sbjct 103885 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCCAAGCCGTCTGGATACCGCAGCTA 103944 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 ||||||| ||||||||| |||||||||||||||||||||| | || | | ||||| Sbjct 103945 CGAATAATGGAATAGGAC-TGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT 104003 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| | ||||| | ||||| | |||||||||||||||||| | Sbjct 104004 TAAGAGGGACGGCTGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGT 104063 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| || | | |||||| || ||||| |||||||||||||||| ||| |||| Sbjct 104064 GCAAGACGGACCAGAGTGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAATGAAA 104122 Query 311 GTTAGGGG 318 || || || Sbjct 104123 GTCAGAGG 104130 >seq826 Length=936100 Score = 129 bits (142), Expect = 1e-27 Identities = 180/244 (74%), Gaps = 9/244 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTA-GAGTGTTCAAAGCAGGCCTTTGCTC---GAATACATTAGCA 129 |||||||||||||||||| |||||||||||||||| || ||| | |||| ||| Sbjct 184365 TTTACTTTGAAAAAATTAAGAGTGTTCAAAGCAGGTCTGAGCTGCCTGGATACTGCAGCT 184424 Query 130 TGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGA 189 |||||||| ||||||||| ||||||||||||||||||||| | || | |||| Sbjct 184425 AGGAATAATGGAATAGGACC-GCGGTTCTATTTTGTTGGTTTTCGGAACTGAGACTATGA 184483 Query 190 TTAATAGGGATAG-TCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTT 248 |||| || || | || ||| ||| |||| | | |||| ||||||||||||| Sbjct 184484 TTAAGAGAGAGGGCTCAGGGCATTCA-TATTGCACAGCTAGAG-TGAAATTCTTGGACCG 184541 Query 249 ATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGA 308 |||||| || | | ||||| || | ||| |||||||||||||||| |||||| Sbjct 184542 GCACAAGACTGACCAGAGAAAAAGCATTTGCAAAGAATGTTTTCATTAATCA-AGAACGA 184600 Query 309 AAGT 312 |||| Sbjct 184601 AAGT 184604 Score = 86.0 bits (94), Expect = 1e-14 Identities = 117/162 (72%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 151 GCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGT 210 |||||| |||||||||||||| | | || | | |||||||| |||||| ||||| Sbjct 120498 GCGGTTTTATTTTGTTGGTTTTTGGAACTGAGGCCATGATTAAGAGGGATGACTGGGGGC 120557 Query 211 GTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAA 270 | ||||| | | |||||||||||||||||| ||||| || | ||||| Sbjct 120558 ATTCGTATTGCACCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAA 120617 Query 271 AGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||| || ||||| |||||||| | ||||| |||| ||||| Sbjct 120618 AGCATTTGCCAAGAATGTTTTCGTGAATCA-AGAACAAAAGT 120658 >seq788 Length=930302 Score = 113 bits (124), Expect = 8e-23 Identities = 109/137 (80%), Gaps = 5/137 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | | |||||||||||||||||||||||| Sbjct 299326 ATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 299267 Query 98 TCAAAGCAGGCC---TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| || | |||| ||| |||||||| ||||||||| |||| Sbjct 299266 TCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGAC-CGCGG 299208 Query 155 TTCTATTTTGTTGGTTT 171 ||||||||||||||||| Sbjct 299207 TTCTATTTTGTTGGTTT 299191 >seq286 Length=2937124 Score = 87.8 bits (96), Expect = 3e-15 Identities = 89/115 (77%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 |||||||| ||||||||| |||||||||||||||||||| || || | | ||||| Sbjct 1304020 GGAATAATGGAATAGGACCA-CGGTTCTATTTTGTTGGTTTTCAGAACTGAGGCCATGAT 1303962 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGA 245 ||| ||||| || |||||| | ||||| | |||||||||||||||||| Sbjct 1303961 TAAGAGGGACAGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGA 1303907 >seq15 Length=10322312 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/72 (83%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| ||| |||| ||| || ||| | | |||||||||||||||||||||||| Sbjct 8004511 ATGCTCTTAGCTGAGTGTCCCGTGGGGCCCGATATGTTTACTTTGAAAAAATTAGAGTGT 8004570 Query 98 TCAAAGCAGGCC 109 |||||||||||| Sbjct 8004571 TCAAAGCAGGCC 8004582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915146890944